RNA–Protein interactions for RNA: ENST00000428064.5

LIMS1-208, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 2

Gene LIMS1, Length 637 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-208ENST00000428064 CRMP1Q14194 572 aa17.45■□□□□ 0.38
LIMS1-208ENST00000428064 C11orf91Q3C1V1 193 aa17.45■□□□□ 0.38
LIMS1-208ENST00000428064 LYPD4Q6UWN0 246 aa17.45■□□□□ 0.38
LIMS1-208ENST00000428064 ARHGAP24Q8N264 748 aa17.45■□□□□ 0.38
LIMS1-208ENST00000428064 AQP11Q8NBQ7 271 aa17.45■□□□□ 0.38
LIMS1-208ENST00000428064 OR2T33Q8NG76 320 aa17.45■□□□□ 0.38
LIMS1-208ENST00000428064 SLAMF6Q96DU3 332 aa17.45■□□□□ 0.38
LIMS1-208ENST00000428064 DGCR6LQ9BY27 220 aa17.45■□□□□ 0.38
LIMS1-208ENST00000428064 ERVK-18Q9QC07 812 aa17.45■□□□□ 0.38
LIMS1-208ENST00000428064 CTSZQ9UBR2 303 aa17.45■□□□□ 0.38
LIMS1-208ENST00000428064 IGHV3OR16-10A0A075B7F0 116 aa17.44■□□□□ 0.38
LIMS1-208ENST00000428064 TRAV38-1A0A0B4J264 116 aa17.44■□□□□ 0.38
LIMS1-208ENST00000428064 TNFRSF13BO14836 293 aaPredicted RBP17.44■□□□□ 0.38
LIMS1-208ENST00000428064 SPARCP09486 303 aa17.44■□□□□ 0.38
LIMS1-208ENST00000428064 SPI1P17947 270 aa17.44■□□□□ 0.38
LIMS1-208ENST00000428064 DDOSTP39656 456 aa17.44■□□□□ 0.38
LIMS1-208ENST00000428064 FGF12P61328 243 aa17.44■□□□□ 0.38
LIMS1-208ENST00000428064 MXRA7P84157 204 aa17.44■□□□□ 0.38
LIMS1-208ENST00000428064 GPR157Q5UAW9 335 aa17.44■□□□□ 0.38
LIMS1-208ENST00000428064 LCN8Q6JVE9 175 aa17.44■□□□□ 0.38
LIMS1-208ENST00000428064 CYP2R1Q6VVX0 501 aa17.44■□□□□ 0.38
LIMS1-208ENST00000428064 C19orf18Q8NEA5 215 aa17.44■□□□□ 0.38
LIMS1-208ENST00000428064 OR51L1Q8NGJ5 315 aa17.44■□□□□ 0.38
LIMS1-208ENST00000428064 OR9Q1Q8NGQ5 310 aa17.44■□□□□ 0.38
LIMS1-208ENST00000428064 TSSK6Q9BXA6 273 aa17.44■□□□□ 0.38
LIMS1-208ENST00000428064 UNKLQ9H9P5 680 aaKnown RBP17.44■□□□□ 0.38
LIMS1-208ENST00000428064 PKD1L1Q8TDX9 2849 aa17.43■□□□□ 0.38
LIMS1-208ENST00000428064 MGAM2Q2M2H8 2515 aa17.43■□□□□ 0.38
LIMS1-208ENST00000428064 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.43■□□□□ 0.38
LIMS1-208ENST00000428064 OOEPA6NGQ2 149 aa17.43■□□□□ 0.38
LIMS1-208ENST00000428064 GRB2P62993 217 aaKnown RBP17.43■□□□□ 0.38
LIMS1-208ENST00000428064 GK3PQ14409 553 aa17.43■□□□□ 0.38
LIMS1-208ENST00000428064 MICAQ29983 383 aa17.43■□□□□ 0.38
LIMS1-208ENST00000428064 C16orf87Q6PH81 154 aa17.43■□□□□ 0.38
LIMS1-208ENST00000428064 RHOUQ7L0Q8 258 aa17.43■□□□□ 0.38
LIMS1-208ENST00000428064 OR56B2PQ8NGI1 322 aa17.43■□□□□ 0.38
LIMS1-208ENST00000428064 OR4Q3Q8NH05 313 aa17.43■□□□□ 0.38
LIMS1-208ENST00000428064 TECTBQ96PL2 329 aa17.43■□□□□ 0.38
LIMS1-208ENST00000428064 SLITRK2Q9H156 845 aa17.43■□□□□ 0.38
LIMS1-208ENST00000428064 MMADHCQ9H3L0 296 aaPredicted RBP17.43■□□□□ 0.38
LIMS1-208ENST00000428064 TOR3AQ9H497 397 aa17.43■□□□□ 0.38
LIMS1-208ENST00000428064 NOX4Q9NPH5 578 aa17.43■□□□□ 0.38
LIMS1-208ENST00000428064 C14orf119Q9NWQ9 140 aa17.43■□□□□ 0.38
LIMS1-208ENST00000428064 SOX21Q9Y651 276 aaPredicted RBP17.43■□□□□ 0.38
LIMS1-208ENST00000428064 C5orf63A6NC05 138 aa17.42■□□□□ 0.38
LIMS1-208ENST00000428064 SRRM5B3KS81 715 aa17.42■□□□□ 0.38
LIMS1-208ENST00000428064 ZNF879B4DU55 563 aa17.42■□□□□ 0.38
LIMS1-208ENST00000428064 P2RY10O00398 339 aa17.42■□□□□ 0.38
LIMS1-208ENST00000428064 ZNF593O00488 134 aaPredicted RBP17.42■□□□□ 0.38
LIMS1-208ENST00000428064 IFNGP01579 166 aa17.42■□□□□ 0.38
LIMS1-208ENST00000428064 MMP9P14780 707 aa17.42■□□□□ 0.38
LIMS1-208ENST00000428064 SLC15A1P46059 708 aa17.42■□□□□ 0.38
LIMS1-208ENST00000428064 PRKXP51817 358 aa17.42■□□□□ 0.38
LIMS1-208ENST00000428064 TAF13Q15543 124 aa17.42■□□□□ 0.38
LIMS1-208ENST00000428064 BRD3OSQ6XYD6 125 aa17.42■□□□□ 0.38
LIMS1-208ENST00000428064 GCSAMQ8N6F7 178 aa17.42■□□□□ 0.38
LIMS1-208ENST00000428064 ZNF511Q8NB15 262 aa17.42■□□□□ 0.38
LIMS1-208ENST00000428064 SP140LQ9H930 580 aa17.42■□□□□ 0.38
LIMS1-208ENST00000428064 KIF17Q9P2E2 1029 aa17.42■□□□□ 0.38
LIMS1-208ENST00000428064 MMP24Q9Y5R2 645 aa17.42■□□□□ 0.38
LIMS1-208ENST00000428064 DHRS12A0PJE2 317 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 C3orf80F5H4A9 247 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 HOXA3O43365 443 aaPredicted RBP17.41■□□□□ 0.38
LIMS1-208ENST00000428064 LHBP01229 141 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 APOC1P02654 83 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 GYPBP06028 91 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 ZNF3P17036 446 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 CFHR2P36980 270 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 GNGT1P63211 74 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 HOXA4Q00056 320 aaPredicted RBP17.41■□□□□ 0.38
LIMS1-208ENST00000428064 OR8B8Q15620 311 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 DEFB112Q30KQ8 113 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 LINC01590Q5TEZ4 76 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 TEX36Q5VZQ5 186 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 SFRP4Q6FHJ7 346 aaPredicted RBP17.41■□□□□ 0.38
LIMS1-208ENST00000428064 OR2T5Q6IEZ7 315 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 CD300LDQ6UXZ3 194 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 TMEM86BQ8N661 226 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 PNLDC1Q8NA58 520 aaKnown RBP17.41■□□□□ 0.38
LIMS1-208ENST00000428064 OR2T29Q8NH02 315 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 REEP1Q9H902 201 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 CMC2Q9NRP2 79 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 CENPMQ9NSP4 180 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 ARMC1Q9NVT9 282 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 C1orf123Q9NWV4 160 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 KAAG1Q9UBP8 84 aa17.41■□□□□ 0.38
LIMS1-208ENST00000428064 SAMHD1Q9Y3Z3 626 aaKnown RBP17.41■□□□□ 0.38
LIMS1-208ENST00000428064 MDFIC2A0A1B0GVS7 189 aa17.4■□□□□ 0.38
LIMS1-208ENST00000428064 ADAM20O43506 726 aa17.4■□□□□ 0.38
LIMS1-208ENST00000428064 SOX14O95416 240 aa17.4■□□□□ 0.38
LIMS1-208ENST00000428064 CLUP10909 449 aa17.4■□□□□ 0.38
LIMS1-208ENST00000428064 SLC2A1P11166 492 aa17.4■□□□□ 0.38
LIMS1-208ENST00000428064 FAM98BQ52LJ0 330 aaKnown RBP17.4■□□□□ 0.38
LIMS1-208ENST00000428064 Q6YL49 198 aa17.4■□□□□ 0.38
LIMS1-208ENST00000428064 DHFR2Q86XF0 187 aa17.4■□□□□ 0.38
LIMS1-208ENST00000428064 OR6K6Q8NGW6 343 aa17.4■□□□□ 0.38
LIMS1-208ENST00000428064 RNF133Q8WVZ7 376 aa17.4■□□□□ 0.38
LIMS1-208ENST00000428064 MARCH7Q9H992 704 aa17.4■□□□□ 0.38
LIMS1-208ENST00000428064 RNPEPL1Q9HAU8 725 aa17.4■□□□□ 0.38
LIMS1-208ENST00000428064 SMURF1Q9HCE7 757 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms