RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 DEFA5Q01523 94 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 GSG1LQ6UXU4 331 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 PPP1R1CQ8WVI7 109 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 OR2AT4A6NND4 320 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 F5H0A9 414 aaPredicted RBP11.84□□□□□ -0.51
VPS54-203ENST00000409558 RAB27BO00194 218 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 HSPB6O14558 160 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 SFTPBP07988 381 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 TMEM225BP0DP42 221 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 AANATQ16613 207 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 PAQR4Q8N4S7 273 aaPredicted RBP11.84□□□□□ -0.51
VPS54-203ENST00000409558 ZNF454Q8N9F8 522 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 OR2M3Q8NG83 312 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 SAP25Q8TEE9 199 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 RNF133Q8WVZ7 376 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 HGDQ93099 445 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 PARP12Q9H0J9 701 aaKnown RBP11.84□□□□□ -0.51
VPS54-203ENST00000409558 FAM206AQ9NX38 181 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 WNT16Q9UBV4 365 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 PISDQ9UG56 409 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 CYB5R1Q9UHQ9 305 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 ZNF208O43345 1280 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 GIPP09681 153 aaPredicted RBP11.84□□□□□ -0.51
VPS54-203ENST00000409558 UBCP0CG48 685 aaKnown RBP11.84□□□□□ -0.51
VPS54-203ENST00000409558 BLVRBP30043 206 aaPredicted RBP11.84□□□□□ -0.51
VPS54-203ENST00000409558 MAP2K6P52564 334 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 PRSS42Q7Z5A4 293 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 TMEM17Q86X19 198 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 DTX1Q86Y01 620 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 NOXO1Q8NFA2 376 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 TOMM40LQ969M1 308 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 RAB3CQ96E17 227 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 TMEM59Q9BXS4 323 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 RAB33BQ9H082 229 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 SLC39A1Q9NY26 324 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 C19orf25Q9UFG5 118 aaPredicted RBP11.84□□□□□ -0.51
VPS54-203ENST00000409558 OR2M5A3KFT3 312 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 OR5H14A6NHG9 310 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 TCN2P20062 427 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 WIPI1Q5MNZ9 446 aaPredicted RBP11.83□□□□□ -0.52
VPS54-203ENST00000409558 ELFN2Q5R3F8 820 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 SLC36A1Q7Z2H8 476 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 SLC22A24Q8N4F4 322 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 OR13C8Q8NGS7 320 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 DMRTA2Q96SC8 542 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 ULBP2Q9BZM5 246 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 MPTX1A8MV57 137 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 DISC1C4P0D8 188 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 TP53I11O14683 189 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 TRAF3IP2O43734 574 aaPredicted RBP11.83□□□□□ -0.52
VPS54-203ENST00000409558 AMY2BP19961 511 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 ARPC4P59998 168 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 CLEC9AQ6UXN8 241 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 RPS19BP1Q86WX3 136 aaKnown RBP11.83□□□□□ -0.52
VPS54-203ENST00000409558 CHMP1AQ9HD42 196 aaPredicted RBP11.83□□□□□ -0.52
VPS54-203ENST00000409558 NBASA2RRP1 2371 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 PLSCR5A0PG75 271 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 LAMTOR5O43504 91 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 SCGB1D2O95969 90 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 LCATP04180 440 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 STARD6P59095 220 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 CSNK2A1P68400 391 aaPredicted RBP11.83□□□□□ -0.52
VPS54-203ENST00000409558 BHLHE23Q8NDY6 225 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 CSNK2A3Q8NEV1 391 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 DOCK10Q96BY6 2186 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 METTL8Q9H825 291 aaKnown RBP11.83□□□□□ -0.52
VPS54-203ENST00000409558 SDHAF2Q9NX18 166 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 PIGLQ9Y2B2 252 aa11.83□□□□□ -0.52
VPS54-203ENST00000409558 RPS10-NUDT3A0A1W2PQS6 291 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 IFI6P09912 130 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 RRADP55042 308 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 FXYD4P59646 89 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 MFSD13AQ14CX5 517 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 ALKBH2Q6NS38 261 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 RPS4Y2Q8TD47 263 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 CCDC107Q8WV48 283 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 DUSP23Q9BVJ7 150 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 UPB1Q9UBR1 384 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 SHANK1Q9Y566 2161 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 DCHS1Q96JQ0 3298 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 MED13Q9UHV7 2174 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 A0A096LPE4 126 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 A0A1W2PPZ6 126 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 CXCL13O43927 109 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 LDOC1O95751 146 aaPredicted RBP11.82□□□□□ -0.52
VPS54-203ENST00000409558 CD1AP06126 327 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 TAF9Q16594 264 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 ZNF813Q6ZN06 617 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 C6orf201Q7Z4U5 140 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 MRGPRX4Q96LA9 322 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 C12orf10Q9HB07 376 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 A0A0B4J2A0 478 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 A0A1B0GV50 99 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 MEGF11A6BM72 1044 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 TLX3O43711 291 aaPredicted RBP11.82□□□□□ -0.52
VPS54-203ENST00000409558 PGA4P0DJD7 388 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 PGA3P0DJD8 388 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 DLSTP36957 453 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 PTGDSP41222 190 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 RHBDD1Q8TEB9 315 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms