RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 SLC35E2P0CK97 266 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 SPICQ8N5J4 248 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 ESRP2Q9H6T0 727 aaKnown RBP10.75□□□□□ -0.69
SYNPO-202ENST00000394243 HOXD9P28356 352 aaPredicted RBP10.75□□□□□ -0.69
SYNPO-202ENST00000394243 STUMQ69YW2 141 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 OR2M7Q8NG81 312 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 EDAQ92838 391 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 LMAN1LQ9HAT1 526 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 SLC17A4Q9Y2C5 497 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 OR5AL1P0C617 328 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 TRMT12Q53H54 448 aaKnown RBP10.75□□□□□ -0.69
SYNPO-202ENST00000394243 FAM26DQ5JW98 314 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 JAM3Q9BX67 310 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 SLC5A6Q9Y289 635 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 OR5H15A6NDH6 313 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 OR5H1A6NKK0 313 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 G3V3Y1 287 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 EMC4Q5J8M3 183 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 ZNF573Q86YE8 665 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 OR52N4Q8NGI2 321 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 GPR137Q96N19 417 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 ARID1AO14497 2285 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 SELENOPP49908 381 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 INSL4Q14641 139 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 MRM1Q6IN84 353 aaKnown RBP10.75□□□□□ -0.69
SYNPO-202ENST00000394243 PAQR9Q6ZVX9 377 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 OR5AS1Q8N127 324 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 C19orf47Q8N9M1 422 aaKnown RBP10.75□□□□□ -0.69
SYNPO-202ENST00000394243 SCCPDHQ8NBX0 429 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 NUP205Q92621 2012 aa10.75□□□□□ -0.69
SYNPO-202ENST00000394243 LIMS3P0CW19 117 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 LIMS4P0CW20 117 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 CYBAP13498 195 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 SP6Q3SY56 376 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 PINX1Q96BK5 328 aaKnown RBP10.74□□□□□ -0.69
SYNPO-202ENST00000394243 SMIM12Q96EX1 92 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 THOC3Q96J01 351 aaKnown RBP10.74□□□□□ -0.69
SYNPO-202ENST00000394243 SPATA6Q9NWH7 488 aaPredicted RBP10.74□□□□□ -0.69
SYNPO-202ENST00000394243 ASB1Q9Y576 335 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 LAMB4A4D0S4 1761 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 TCRBV5S1A1TA0A578 114 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 FXYD1O00168 92 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 TMEM267Q0VDI3 215 aaPredicted RBP10.74□□□□□ -0.69
SYNPO-202ENST00000394243 DHRS2Q13268 280 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 PTOV1Q86YD1 416 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 TMEFF2Q9UIK5 374 aaPredicted RBP10.74□□□□□ -0.69
SYNPO-202ENST00000394243 ING1Q9UK53 422 aaPredicted RBP10.74□□□□□ -0.69
SYNPO-202ENST00000394243 FOXJ3Q9UPW0 622 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 HMSDA8MTL9 139 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 EN2P19622 333 aaPredicted RBP10.74□□□□□ -0.69
SYNPO-202ENST00000394243 RFC3P40938 356 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 CNN1P51911 297 aaKnown RBP10.74□□□□□ -0.69
SYNPO-202ENST00000394243 GNB1P62873 340 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 TIAL1Q01085 375 aaKnown RBP eCLIP10.74□□□□□ -0.69
SYNPO-202ENST00000394243 LYPD8Q6UX82 237 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 SIRT6Q8N6T7 355 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 BOKQ9UMX3 212 aaPredicted RBP10.74□□□□□ -0.69
SYNPO-202ENST00000394243 ABCD4O14678 606 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 SULT1A2P50226 295 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 ZNF687Q8N1G0 1237 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 CIB3Q96Q77 187 aaPredicted RBP10.74□□□□□ -0.69
SYNPO-202ENST00000394243 OR5K3A6NET4 321 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 GPR12P47775 334 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 FAM78BQ5VT40 261 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 NUBPLQ8TB37 319 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 RDH5Q92781 318 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 C1QTNF6Q9BXI9 259 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 R4GMQ9 66 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 FAM166BA8MTA8 275 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 M0R1X1 148 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 EIF1BO60739 113 aaKnown RBP10.74□□□□□ -0.69
SYNPO-202ENST00000394243 MPC2O95563 127 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 CER1O95813 267 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 RAG2P55895 527 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 C9orf62Q8N4C0 152 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 SLCO1C1Q9NYB5 712 aa10.74□□□□□ -0.69
SYNPO-202ENST00000394243 CCL5P13501 91 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 PPOXP50336 477 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 LIM2P55344 173 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 PPP1R1AQ13522 171 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 LHFPL2Q6ZUX7 228 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 CISD2Q8N5K1 135 aaKnown RBP10.73□□□□□ -0.69
SYNPO-202ENST00000394243 ADGRG7Q96K78 797 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 LPAR3Q9UBY5 353 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 DUSP13Q9UII6 198 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 RALYQ9UKM9 306 aaKnown RBP10.73□□□□□ -0.69
SYNPO-202ENST00000394243 ATF1P18846 271 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 PLA1AQ53H76 456 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 ZDHHC22Q8N966 263 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 OR10C1Q96KK4 312 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 LINC00862A6NCI5 91 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 SLC37A1P57057 533 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 HES1Q14469 280 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 PET117Q6UWS5 81 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 SIGLEC11Q96RL6 698 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 NDFIP1Q9BT67 221 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 P2RY12Q9H244 342 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 ZNF552Q9H707 407 aaPredicted RBP10.73□□□□□ -0.69
SYNPO-202ENST00000394243 PIAS3Q9Y6X2 628 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 C9orf170A2RU37 121 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms