RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 MOKQ9UQ07 419 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 MYO9AB2RTY4 2548 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 ZNF879B4DU55 563 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 M0R135 149 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 NGFRP08138 427 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 SBK2P0C263 348 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 ACTA2P62736 377 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 ACTG2P63267 376 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 FAM27E3Q08E93 113 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 ADAM5Q6NVV9 412 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 PSMF1Q92530 271 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 GHSRQ92847 366 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 FGGYQ96C11 551 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 KCTD12Q96CX2 325 aaKnown RBP9.12□□□□□ -0.95
COL6A3-205ENST00000392004 ZNF799Q96GE5 643 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 SRXN1Q9BYN0 137 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 ZNF701Q9NV72 531 aaPredicted RBP9.12□□□□□ -0.95
COL6A3-205ENST00000392004 ARPC4-TTLL3A0A0A6YYG9 625 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 WDR1O75083 606 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 GLCEO94923 617 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 CD3GP09693 182 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 SRP9P49458 86 aaKnown RBP9.12□□□□□ -0.95
COL6A3-205ENST00000392004 SNTB2Q13425 540 aaKnown RBP9.12□□□□□ -0.95
COL6A3-205ENST00000392004 TBC1D28Q2M2D7 210 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 PABPC1L2AQ5JQF8 200 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 VWA1Q6PCB0 445 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 ZSCAN4Q8NAM6 433 aaPredicted RBP9.12□□□□□ -0.95
COL6A3-205ENST00000392004 OR11H4Q8NGC9 324 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 GIMAP1Q8WWP7 306 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 ST8SIA4Q92187 359 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 ZNF764Q96H86 408 aaPredicted RBP9.12□□□□□ -0.95
COL6A3-205ENST00000392004 SYT3Q9BQG1 590 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 GHITMQ9H3K2 345 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 ANKRD19PQ9H560 264 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 ZNF442Q9H7R0 627 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 ZMAT3Q9HA38 289 aaKnown RBP9.12□□□□□ -0.95
COL6A3-205ENST00000392004 ERRFI1Q9UJM3 462 aaPredicted RBP9.12□□□□□ -0.95
COL6A3-205ENST00000392004 FZD7O75084 574 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 ACTL6AO96019 429 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 RLN1P04808 185 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 CXCL3P19876 107 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 CX3CR1P49238 355 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 CDK5Q00535 292 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 GSG1Q2KHT4 349 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 LGALSLQ3ZCW2 172 aaPredicted RBP9.12□□□□□ -0.95
COL6A3-205ENST00000392004 ACSM3Q53FZ2 586 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 CD200R1LQ6Q8B3 271 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 DBX2Q6ZNG2 339 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 TRAPPC6BQ86SZ2 158 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 POTEKPQ9BYX7 375 aa9.12□□□□□ -0.95
COL6A3-205ENST00000392004 GDF2Q9UK05 429 aaPredicted RBP9.12□□□□□ -0.95
COL6A3-205ENST00000392004 LOC102723996A0A087X1L8 192 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 MEIS3P1A6NDR6 274 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 CDRT15L2A8MXV6 281 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 PRSS44E7EML9 344 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 LANCL1O43813 399 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 WNT11O96014 354 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 HRGP04196 525 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 CD53P19397 219 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 CD79BP40259 229 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 INSL4Q14641 139 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 THEM4Q5T1C6 240 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 OR2T2Q6IF00 324 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 ZNF704Q6ZNC4 412 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-205ENST00000392004 NUFIP2Q7Z417 695 aaKnown RBP9.11□□□□□ -0.95
COL6A3-205ENST00000392004 MS4A15Q8N5U1 240 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 LIPHQ8WWY8 451 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 ZNF703Q9H7S9 590 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-205ENST00000392004 UBTD1Q9HAC8 227 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 BABAM2Q9NXR7 383 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 MRPL15Q9P015 296 aaKnown RBP9.11□□□□□ -0.95
COL6A3-205ENST00000392004 GLS2Q9UI32 602 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 PLEKHA6Q9Y2H5 1048 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 A0A1B0GW55 424 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 A0A1W2PQD3 144 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 LALBAP00709 142 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 IFNA6P05013 189 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 EIF4EP06730 217 aaKnown RBP9.11□□□□□ -0.95
COL6A3-205ENST00000392004 DUX4L2P0CJ85 424 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 DUX4L3P0CJ86 424 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 DUX4L4P0CJ87 422 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 DUX4L5P0CJ88 424 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 DUX4L6P0CJ89 424 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 DUX4L7P0CJ90 424 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 SERPINA2P20848 420 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 GNLYP22749 145 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 GABRR1P24046 479 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 FKBP2P26885 142 aaKnown RBP9.11□□□□□ -0.95
COL6A3-205ENST00000392004 DUSP1P28562 367 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 OPCMLQ14982 345 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 RNPS1Q15287 305 aaKnown RBP9.11□□□□□ -0.95
COL6A3-205ENST00000392004 RSU1Q15404 277 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 AWAT2Q6E213 333 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 C11orf88Q6PI97 169 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 CFAP77Q6ZQR2 320 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 DTX1Q86Y01 620 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 SIAH3Q8IW03 269 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 OR52N1Q8NH53 320 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 OR14A2Q96R54 314 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 ABHD6Q9BV23 337 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms