RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 CD70P32970 193 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 PFN2P35080 140 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 GGT2P36268 569 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 TALDO1P37837 337 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 PMELP40967 661 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 PPICP45877 212 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 CCNG1P51959 295 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 PSMD4P55036 377 aaKnown RBP1.21□□□□□ -2.22
VPS13A-206ENST00000376646 GFERP55789 205 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 LCN2P80188 198 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 EIF4EBP1Q13541 118 aaPredicted RBP1.21□□□□□ -2.22
VPS13A-206ENST00000376646 SHHQ15465 462 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 ABCA11PQ4W5N1 156 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 Q5W150 140 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 RWDD4Q6NW29 188 aaKnown RBP1.21□□□□□ -2.22
VPS13A-206ENST00000376646 WDR82Q6UXN9 313 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 SLC16A13Q7RTY0 426 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 MRPL21Q7Z2W9 205 aaKnown RBP1.21□□□□□ -2.22
VPS13A-206ENST00000376646 OR10W1Q8NGF6 305 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 NARS2Q96I59 477 aaKnown RBP1.21□□□□□ -2.22
VPS13A-206ENST00000376646 BTN2A3PQ96KV6 586 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 SCGB3A2Q96PL1 93 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 GPR21Q99679 349 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 RBBP8Q99708 897 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 TMEM243Q9BU79 118 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 DEFB129Q9H1M3 183 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 FBXO44Q9H4M3 255 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 CD209Q9NNX6 404 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 RRAGDQ9NQL2 400 aaPredicted RBP1.21□□□□□ -2.22
VPS13A-206ENST00000376646 SIRT7Q9NRC8 400 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 NECAP2Q9NVZ3 263 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 ZMAT5Q9UDW3 170 aaKnown RBP1.21□□□□□ -2.22
VPS13A-206ENST00000376646 PCM1Q15154 2024 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 NEURL4Q96JN8 1562 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 DOCK9Q9BZ29 2069 aa1.21□□□□□ -2.22
VPS13A-206ENST00000376646 IGLV4-60A0A075B6I1 120 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 IGHV3OR16-9A0A0B4J2B5 98 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 LRCOL1A6NCL2 159 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 KRBOX1C9JBD0 128 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 H0YJW9 148 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 BPY2O14599 106 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 SOCS1O15524 211 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 SLC16A7O60669 478 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 HLA-DQA1P01909 254 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 MBP02144 154 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 CATP04040 527 aaKnown RBP1.2□□□□□ -2.22
VPS13A-206ENST00000376646 GLAP06280 429 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 CISD3P0C7P0 127 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 LINC00869P0C866 280 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 MSR1P21757 451 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 MYL9P24844 172 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 POLR2IP36954 125 aaKnown RBP1.2□□□□□ -2.22
VPS13A-206ENST00000376646 CFHR2P36980 270 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 MYCNOSP40205 109 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 AP1S2P56377 157 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 TAS2R31P59538 309 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 CRADDP78560 199 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 C5orf64Q2M2E5 130 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 MLIPQ5VWP3 458 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 H3F3CQ6NXT2 135 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 VTCN1Q7Z7D3 282 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 UBALD2Q8IYN6 164 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 TMEM256Q8N2U0 113 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 OR5T3Q8NGG3 340 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 OR10G6Q8NH81 332 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 CIRBP-AS1Q8TBR5 109 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 TCP10LQ8TDR4 215 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 GGTLC1Q9BX51 225 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 SAMD10Q9BYL1 202 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 IL22Q9GZX6 179 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 ADA2Q9NZK5 511 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 OPN4Q9UHM6 478 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 RFNGQ9Y644 331 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 SLIT3O75094 1523 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 ARPC4-TTLL3A0A0A6YYG9 625 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 SLC22A20A6NK97 555 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 CHST10O43529 356 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 SERPINB7O75635 380 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 CCNKO75909 580 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 TACSTD2P09758 323 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 MUC1P15941 1255 aaPredicted RBP1.2□□□□□ -2.22
VPS13A-206ENST00000376646 PRKACAP17612 351 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 LOXP28300 417 aaPredicted RBP1.2□□□□□ -2.22
VPS13A-206ENST00000376646 OPRK1P41145 380 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 YWHAEP62258 255 aaKnown RBP1.2□□□□□ -2.22
VPS13A-206ENST00000376646 C16orf72Q14CZ0 275 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 C5orf47Q569G3 176 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 TPRG1LQ5T0D9 272 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 ZFP1Q6P2D0 407 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 ULK3Q6PHR2 472 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 RAB43Q86YS6 212 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 ZNF645Q8N7E2 425 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 UBAC2Q8NBM4 344 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 ZNF461Q8TAF7 563 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 BAALCQ8WXS3 180 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 GHSRQ92847 366 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 RERGQ96A58 199 aaPredicted RBP1.2□□□□□ -2.22
VPS13A-206ENST00000376646 L3HYPDHQ96EM0 354 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 AGMATQ9BSE5 352 aa1.2□□□□□ -2.22
VPS13A-206ENST00000376646 ZNF442Q9H7R0 627 aa1.2□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms