RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 IAH1Q2TAA2 248 aaPredicted RBP13.33□□□□□ -0.27
COL17A1-201ENST00000353479 FCRL1Q96LA6 429 aa13.33□□□□□ -0.27
COL17A1-201ENST00000353479 OR5B12Q96R08 314 aa13.33□□□□□ -0.27
COL17A1-201ENST00000353479 SLA2Q9H6Q3 261 aa13.33□□□□□ -0.27
COL17A1-201ENST00000353479 TMEM74BQ9NUR3 256 aa13.33□□□□□ -0.27
COL17A1-201ENST00000353479 EDARQ9UNE0 448 aa13.33□□□□□ -0.27
COL17A1-201ENST00000353479 SCN3AQ9NY46 2000 aa13.33□□□□□ -0.28
COL17A1-201ENST00000353479 B4E171 279 aa13.33□□□□□ -0.28
COL17A1-201ENST00000353479 TSPAN7P41732 249 aa13.33□□□□□ -0.28
COL17A1-201ENST00000353479 HNF4GQ14541 408 aa13.33□□□□□ -0.28
COL17A1-201ENST00000353479 CA5BP1Q8WTZ4 195 aa13.33□□□□□ -0.28
COL17A1-201ENST00000353479 ZNF2Q9BSG1 426 aaPredicted RBP13.33□□□□□ -0.28
COL17A1-201ENST00000353479 FBXO8Q9NRD0 319 aa13.33□□□□□ -0.28
COL17A1-201ENST00000353479 SDCBPO00560 298 aaPredicted RBP13.33□□□□□ -0.28
COL17A1-201ENST00000353479 PAQR8Q8TEZ7 354 aa13.33□□□□□ -0.28
COL17A1-201ENST00000353479 DERL3Q96Q80 235 aa13.33□□□□□ -0.28
COL17A1-201ENST00000353479 PLEKHF2Q9H8W4 249 aa13.33□□□□□ -0.28
COL17A1-201ENST00000353479 HLA-HP01893 362 aa13.33□□□□□ -0.28
COL17A1-201ENST00000353479 ATF1P18846 271 aa13.33□□□□□ -0.28
COL17A1-201ENST00000353479 RRAS2P62070 204 aaPredicted RBP13.33□□□□□ -0.28
COL17A1-201ENST00000353479 FCN2Q15485 313 aa13.33□□□□□ -0.28
COL17A1-201ENST00000353479 SLC25A35Q3KQZ1 300 aa13.33□□□□□ -0.28
COL17A1-201ENST00000353479 PABPC1L2AQ5JQF8 200 aa13.33□□□□□ -0.28
COL17A1-201ENST00000353479 C10orf111Q8N326 155 aa13.33□□□□□ -0.28
COL17A1-201ENST00000353479 DYNC2LI1Q8TCX1 351 aa13.33□□□□□ -0.28
COL17A1-201ENST00000353479 SLC23A1Q9UHI7 598 aa13.33□□□□□ -0.28
COL17A1-201ENST00000353479 CES1P1Q9UKY3 287 aa13.33□□□□□ -0.28
COL17A1-201ENST00000353479 FZR1Q9UM11 496 aa13.33□□□□□ -0.28
COL17A1-201ENST00000353479 TRIM64CA6NLI5 447 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 PMS2P2O95744 297 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 PATE4P0C8F1 98 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 MGMTP16455 207 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 FUT6P51993 359 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 TIMM8BQ9Y5J9 83 aaPredicted RBP13.32□□□□□ -0.28
COL17A1-201ENST00000353479 ANGPTL7O43827 346 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 GLI4P10075 376 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 CTLA4P16410 223 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 THBS4P35443 961 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 RAC3P60763 192 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 WDR38Q5JTN6 314 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 ATG4DQ86TL0 474 aaPredicted RBP13.32□□□□□ -0.28
COL17A1-201ENST00000353479 CXorf67Q86X51 503 aaPredicted RBP13.32□□□□□ -0.28
COL17A1-201ENST00000353479 ZNF721Q8TF20 911 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 OIT3Q8WWZ8 545 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 DNASE2BQ8WZ79 361 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 TRBV5-3A0A0A0MS03 114 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 MPZL1O95297 269 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 PLA2G7Q13093 441 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 SLC30A7Q8NEW0 376 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 OR8D4Q8NGM9 314 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 OPA3Q9H6K4 179 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 QPCTLQ9NXS2 382 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 GHRLQ9UBU3 117 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 A0A0B4J2A0 478 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 CTXN2P0C2S0 81 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 TMIGD3P0DMS9 266 aaPredicted RBP13.32□□□□□ -0.28
COL17A1-201ENST00000353479 CD300LDQ6UXZ3 194 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 DGAT2L6Q6ZPD8 337 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 LGI3Q8N145 548 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 GABRG1Q8N1C3 465 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 UNKLQ9H9P5 680 aaKnown RBP13.32□□□□□ -0.28
COL17A1-201ENST00000353479 SHPKQ9UHJ6 478 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 IGHA2P01877 340 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 OR2Z1Q8NG97 314 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 HIPK2Q9H2X6 1198 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 ADGRL4Q9HBW9 690 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 PILRAQ9UKJ1 303 aa13.32□□□□□ -0.28
COL17A1-201ENST00000353479 SIX6O95475 246 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 ERGP11308 486 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 CCL2P13500 99 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 AKR1C1Q04828 323 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 C9orf152Q5JTZ5 239 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 OR2T2Q6IF00 324 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 DRAM2Q6UX65 266 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 OSR2Q8N2R0 312 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 KIF25Q9UIL4 384 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 PPP1R3CQ9UQK1 317 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 OR6K3Q8NGY3 331 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 OR2AE1Q8NHA4 323 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 TM4SF19Q96DZ7 209 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 DOK1Q99704 481 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 UNC13CQ8NB66 2214 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 EPPINO95925 133 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 EPXP11678 715 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 SKP2Q13309 424 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 FAAP20Q6NZ36 180 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 CCDC28AQ8IWP9 274 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 PP6455Q8WZ26 134 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 CNTNAP3BQ96NU0 1288 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 F8W036 122 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 FFAR1O14842 300 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 MED6O75586 246 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 APOA2P02652 100 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 BLOC1S1P78537 153 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 FAM109AQ8N4B1 249 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 ADAT1Q9BUB4 502 aaKnown RBP13.31□□□□□ -0.28
COL17A1-201ENST00000353479 HEYLQ9NQ87 328 aaPredicted RBP13.31□□□□□ -0.28
COL17A1-201ENST00000353479 TAS2R5Q9NYW4 299 aa13.31□□□□□ -0.28
COL17A1-201ENST00000353479 LRP5LA4QPB2 252 aa13.3□□□□□ -0.28
COL17A1-201ENST00000353479 PCP4L1A6NKN8 68 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms