RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 APOBEC3AP31941 199 aaPredicted RBP3.21□□□□□ -1.89
SYNE1-201ENST00000341594 PSMG3Q9BT73 122 aaPredicted RBP3.21□□□□□ -1.89
SYNE1-201ENST00000341594 METTL17Q9H7H0 456 aaPredicted RBP3.21□□□□□ -1.89
SYNE1-201ENST00000341594 APOBEC3BQ9UH17 382 aaKnown RBP3.21□□□□□ -1.89
SYNE1-201ENST00000341594 TP53TG5Q9Y2B4 290 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 A0A087WV48 116 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 A8MVM7 634 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 WNT11O96014 354 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 H1F0P07305 194 aaKnown RBP3.21□□□□□ -1.89
SYNE1-201ENST00000341594 OR8U9P0C7N5 309 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 ACP2P11117 423 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 AREGP15514 252 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 ZNF678Q5SXM1 525 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 GPRC5AQ8NFJ5 357 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 OR8U1Q8NH10 309 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 SDF2Q99470 211 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 ABHD14AQ9BUJ0 271 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 OR5AC2Q9NZP5 309 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 OARD1Q9Y530 152 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 IGKV6D-21A0A0A0MT36 114 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 TGIF2-C20orf24A0A0A6YYL0 155 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 PCDH7O60245 1069 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 IZUMO4Q1ZYL8 232 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 WDR34Q96EX3 536 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 ZBED6CLQ96FA7 236 aaPredicted RBP3.21□□□□□ -1.89
SYNE1-201ENST00000341594 MTMR11A4FU01 709 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 DCTN6O00399 190 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 CDS2O95674 445 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 OR8U8P0C7N1 319 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 RNPS1Q15287 305 aaKnown RBP3.21□□□□□ -1.9
SYNE1-201ENST00000341594 SLC36A2Q495M3 483 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 CD300LGQ6UXG3 332 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 OR2AJ1Q8NGZ0 328 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 RPP25Q9BUL9 199 aaKnown RBP3.21□□□□□ -1.9
SYNE1-201ENST00000341594 SOX21Q9Y651 276 aaPredicted RBP3.21□□□□□ -1.9
SYNE1-201ENST00000341594 FIGNL2A6NMB9 653 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 ITGA5P08648 1049 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 SOHLH1Q5JUK2 328 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 ALKAL1Q6UXT8 129 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 TMEM151BQ8IW70 566 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 COPS9Q8WXC6 57 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 HAS2Q92819 552 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 KXD1Q9BQD3 176 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 BCL2L10Q9HD36 194 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 MOKQ9UQ07 419 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 DEFB108AA8MXU0 73 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 PLRG1O43660 514 aaKnown RBP3.21□□□□□ -1.9
SYNE1-201ENST00000341594 NSA2O95478 260 aaKnown RBP3.21□□□□□ -1.9
SYNE1-201ENST00000341594 BACE1P56817 501 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 PHLDA2Q53GA4 152 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 SLC35D3Q5M8T2 416 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 THOC6Q86W42 341 aaKnown RBP3.21□□□□□ -1.9
SYNE1-201ENST00000341594 PNLDC1Q8NA58 520 aaKnown RBP3.21□□□□□ -1.9
SYNE1-201ENST00000341594 KLHDC9Q8NEP7 349 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 HEYLQ9NQ87 328 aaPredicted RBP3.21□□□□□ -1.9
SYNE1-201ENST00000341594 PLEK2Q9NYT0 353 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 TRBV6-7A0A0A0MS04 114 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 A0A1W2PQ09 198 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 URADA6NGE7 173 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 KDM4EB2RXH2 506 aaPredicted RBP3.21□□□□□ -1.9
SYNE1-201ENST00000341594 PEX12O00623 359 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 SELENOPP49908 381 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 INSL6Q9Y581 213 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 MSCO60682 206 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 NSG1P42857 185 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 TMEM249Q2WGJ8 235 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 OR9A2Q8NGT5 310 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 Q9Y3F1 56 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 ENTPD2Q9Y5L3 495 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 CCL15-CCL14A0A0B4J2E2 113 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 GNSP15586 552 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 CD68P34810 354 aaPredicted RBP3.21□□□□□ -1.9
SYNE1-201ENST00000341594 KCNMB1Q16558 191 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 OR2L13Q8N349 312 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF709Q8N972 641 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 VAMP8Q9BV40 100 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 CDC42EP3Q9UKI2 254 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 SNCGO76070 127 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 STC1P52823 247 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 NHLH1Q02575 133 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 MTIF3Q9H2K0 278 aaKnown RBP3.21□□□□□ -1.9
SYNE1-201ENST00000341594 TNFSF15O95150 251 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 HLA-HP01893 362 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 CTSAP10619 480 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 SLC6A6P31641 620 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 RRADP55042 308 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 C1QL3Q5VWW1 255 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 ADGRG2Q8IZP9 1017 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 BOD1Q96IK1 185 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF75AQ96N20 296 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 GLCEO94923 617 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 IGSF6O95976 241 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 CRYBB2P43320 205 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 GCGRP47871 477 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 FAM3AP98173 230 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 OR2B11Q5JQS5 317 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 LBX2Q6XYB7 198 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 INSM2Q96T92 566 aaPredicted RBP3.21□□□□□ -1.9
SYNE1-201ENST00000341594 SLC2A8Q9NY64 477 aa3.21□□□□□ -1.9
SYNE1-201ENST00000341594 GFYI3L273 518 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms