RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 GNALP38405 381 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 TDGF1P3P51864 188 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 CXADRP78310 365 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 SPOCK1Q08629 439 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 GTF3C1Q12789 2109 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 PYDC2Q56P42 97 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 C1orf100Q5SVJ3 147 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 RTL6Q6ICC9 239 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 CCBE1Q6UXH8 406 aaPredicted RBP13.46□□□□□ -0.25
LIMS1-202ENST00000338045 COLCA1Q6ZS62 124 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 PGAP1Q75T13 922 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 LURAP1LQ8IV03 231 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 OR8H2Q8N162 312 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 CENPSQ8N2Z9 138 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 SLC25A28Q96A46 364 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 FOXRED1Q96CU9 486 aaPredicted RBP13.46□□□□□ -0.25
LIMS1-202ENST00000338045 C10orf35Q96D05 121 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 ITPKCQ96DU7 683 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 BOD1Q96IK1 185 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 NOX3Q9HBY0 568 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 ZNF71Q9NQZ8 489 aaPredicted RBP13.46□□□□□ -0.25
LIMS1-202ENST00000338045 PLSCR4Q9NRQ2 329 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 DCAF16Q9NXF7 216 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 B3GNT2Q9NY97 397 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 ZNF391Q9UJN7 358 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 TUBD1Q9UJT1 453 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 BSNQ9UPA5 3926 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 ATMQ13315 3056 aa13.46□□□□□ -0.25
LIMS1-202ENST00000338045 A0A0G2JMP0 313 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 A0A0X1KG70 313 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 A6NIN4 97 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 DHRS7CA6NNS2 312 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 TNFSF13O75888 250 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 UBL3O95164 117 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 RAB3AP20336 220 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 IGHV1-2P23083 117 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 NR4A2P43354 598 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 PITPNBP48739 271 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 RAB1AP62820 205 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 RAB11BQ15907 218 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 GFOD2Q3B7J2 385 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 LINC00303Q3SY05 128 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 CMTM4Q8IZR5 234 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 CNEP1R1Q8N9A8 125 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 MINDY2Q8NBR6 621 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 OR4M2Q8NGB6 313 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 OR6M1Q8NGM8 313 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 C1QTNF5Q9BXJ0 243 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 FAM215AQ9Y5M1 114 aa13.46□□□□□ -0.26
LIMS1-202ENST00000338045 LOC100509620A0A075B734 347 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 LINC00854A0A1B0GVQ3 168 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 FIGNL2A6NMB9 653 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 SULT1B1O43704 296 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 LCATP04180 440 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 CRHP06850 196 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 TPOP07202 933 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 CD79AP11912 226 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 COX5AP20674 150 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 TGFBR3Q03167 851 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 FOXF2Q12947 444 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 MADCAM1Q13477 382 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 TBRG1Q3YBR2 411 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 HIKESHIQ53FT3 197 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 PYHIN1Q6K0P9 492 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 VWA1Q6PCB0 445 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 OR5AS1Q8N127 324 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 SPERTQ8NA61 448 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 FAM57AQ8TBR7 257 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 RAB40AQ8WXH6 277 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 RGCCQ9H4X1 137 aa13.45□□□□□ -0.26
LIMS1-202ENST00000338045 TOXO94900 526 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 ALX3O95076 343 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 CGAP01215 116 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 HLA-DQB1P01920 261 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 FAM87AP0C7U9 286 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 HTR2CP28335 458 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 THBS4P35443 961 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 GLYATL3Q5SZD4 288 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 BAIAP2L2Q6UXY1 529 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 CD163Q86VB7 1156 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 ZNF584Q8IVC4 421 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 CDH26Q8IXH8 852 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 Q8N402 240 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 OR51D1Q8NGF3 324 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 OR52N4Q8NGI2 321 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 OR13C9Q8NGT0 318 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 SETD6Q8TBK2 473 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 NANOS1Q8WY41 292 aaKnown RBP13.44□□□□□ -0.26
LIMS1-202ENST00000338045 FAM3DQ96BQ1 224 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 HAVCR1Q96D42 359 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 ZNF75AQ96N20 296 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 METTL17Q9H7H0 456 aaPredicted RBP13.44□□□□□ -0.26
LIMS1-202ENST00000338045 PLEKHA1Q9HB21 404 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 CGGBP1Q9UFW8 167 aaPredicted RBP13.44□□□□□ -0.26
LIMS1-202ENST00000338045 SVILO95425 2214 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 LOC100289279A0A1B0GTE1 492 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 A0A1W2PQ09 198 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 B3GALNT1O75752 331 aa13.44□□□□□ -0.26
LIMS1-202ENST00000338045 ERCC1P07992 297 aaPredicted RBP13.44□□□□□ -0.26
LIMS1-202ENST00000338045 HOXD4P09016 255 aaPredicted RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms