RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 C16orf52Q8NHV5 167 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 MRGPRX3Q96LB0 322 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 SOX7Q9BT81 388 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 TMPRSS5Q9H3S3 457 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 ADGRL4Q9HBW9 690 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 SERTAD4Q9NUC0 356 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 CBY1Q9Y3M2 126 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 CD1CP29017 333 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 MOGAT2Q3SYC2 334 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 TRMT12Q53H54 448 aaKnown RBP9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 C17orf107Q6ZR85 190 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 BOLLQ8N9W6 283 aaKnown RBP9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 OR5AP2Q8NGF4 316 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 TMED6Q8WW62 240 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 APH1AQ96BI3 265 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 SEC11CQ9BY50 192 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 TOLLIPQ9H0E2 274 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 PLEKHB1Q9UF11 243 aaPredicted RBP9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 ZNF816-ZNF321PA0A0X1KG74 233 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 ZNF724A8MTY0 619 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 LBHQ53QV2 105 aaPredicted RBP9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 PAQR6Q6TCH4 344 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 ZNF251Q9BRH9 671 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 JMJD6Q6NYC1 403 aaPredicted RBP9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 TMPRSS7Q7RTY8 843 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 GRAMD2AQ8IUY3 354 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 ISG20L2Q9H9L3 353 aaKnown RBP9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 A6NCN8 305 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 SFTA3P0C7M3 94 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 CD80P33681 288 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 ZNF141Q15928 474 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 NKAIN1Q4KMZ8 207 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 ZNF346Q9UL40 294 aaKnown RBP9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 DNAJC13O75165 2243 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 A0A1B0GTW7 788 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 ABCD4O14678 606 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 UBE2IP63279 158 aaKnown RBP9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 WDR89Q96FK6 387 aaPredicted RBP9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 ST6GAL2Q96JF0 529 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 NXF5Q9H1B4 397 aaKnown RBP9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 MMP25Q9NPA2 562 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 ZNF331Q9NQX6 463 aaPredicted RBP9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 AHCTF1Q8WYP5 2266 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 TUSC2O75896 110 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 DEFB133Q30KQ1 61 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 LINC00303Q3SY05 128 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 TIGITQ495A1 244 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 LAIR1Q6GTX8 287 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 OR51F2Q8NH61 342 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 RHOFQ9HBH0 211 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 GPR84Q9NQS5 396 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 TERTO14746 1132 aaKnown RBP9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 DCTDP32321 178 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 PRSS36Q5K4E3 855 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 OR5T1Q8NG75 326 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 TBC1D29Q9UFV1 150 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 ACKR3P25106 362 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 PIGPP57054 158 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 DHRS2Q13268 280 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 PRTGQ2VWP7 1150 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 PRSS45Q7RTY3 260 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 CCDC74AQ96AQ1 378 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 PLA2G12AQ9BZM1 189 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 B9D1Q9UPM9 204 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 V9GYH0 126 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 TMEM218A2RU14 115 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 CTAG2O75638 210 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 EEF1A2Q05639 463 aaKnown RBP9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 ZNF813Q6ZN06 617 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 LINC00346Q8IVM7 164 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 RELTQ969Z4 430 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 SDSLQ96GA7 329 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 ZPBPQ9BS86 351 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 FAM96BQ9Y3D0 163 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 K7ESM1 405 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 GPR31O00270 319 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 WISP3O95389 354 aaPredicted RBP9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 SHBQ15464 509 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 FAM74A3Q4VXF1 159 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 PIK3IP1Q96FE7 263 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 TAAR6Q96RI8 345 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 SSSCA1O60232 199 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 ABCD3P28288 659 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 IL13RA2Q14627 380 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 MARCH3Q86UD3 253 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 MRPL38Q96DV4 380 aaKnown RBP9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 CNRIP1Q96F85 164 aaPredicted RBP9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 ALX4Q9H161 411 aaPredicted RBP9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 UBE2ZQ9H832 354 aaPredicted RBP9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 XKRY2A2RUG3 117 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 PYCARD-AS1I3L0S3 204 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 CBX7O95931 251 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 EN2P19622 333 aaPredicted RBP9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 RAB13P51153 203 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 RBPJQ06330 500 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 HLXQ14774 488 aaPredicted RBP9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 OR8B8Q15620 311 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 SMIM21Q3B7S5 101 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 PRR18Q8N4B5 295 aa9.3□□□□□ -0.92
CCDC88A-202ENST00000336838 LSMEM1Q8N8F7 131 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms