RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 LOC390937A0A1W2PQ73 354 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 P2RY10O00398 339 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 OR6A2O95222 327 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 RENP00797 406 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 HOXC4P09017 264 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 HOXA5P20719 270 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 GDI1P31150 447 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 CLDN6P56747 220 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 ISXQ2M1V0 245 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 TMEM128Q5BJH2 165 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 NSUN5P2Q63ZY6 315 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 SLC25A36Q96CQ1 311 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 TM4SF19Q96DZ7 209 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 OR5B2Q96R09 309 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 SCRT1Q9BWW7 348 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 SUCNR1Q9BXA5 334 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 SRMSQ9H3Y6 488 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 FLVCR1Q9Y5Y0 555 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 TGFBR3LH3BV60 316 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 ATXN7O15265 892 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 G0S2P27469 103 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 CYCSP99999 105 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 GAMTQ14353 236 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 CHRDL2Q6WN34 429 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 GALNTL5Q7Z4T8 443 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 ERGIC1Q969X5 290 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 FGGYQ96C11 551 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 ABHD6Q9BV23 337 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 SLC26A1Q9H2B4 701 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 DOK5Q9P104 306 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 RFNGQ9Y644 331 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 TMEM14AQ9Y6G1 99 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 ASCC3Q8N3C0 2202 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 SEC16AO15027 2179 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 WDFY3Q8IZQ1 3526 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 LOC107986453A0A1B0GWG9 222 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 ASAH2BP0C7U1 165 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 GNALP38405 381 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 RAB5CP51148 216 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 CEBPGP53567 150 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 SURF2Q15527 256 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 USF2Q15853 346 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 ZNF574Q6ZN55 896 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 LINC00346Q8IVM7 164 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 KDM8Q8N371 416 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 APCDD1LQ8NCL9 501 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 TERB2Q8NHR7 220 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 NT5CQ8TCD5 201 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 MR1Q95460 341 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 CHST5Q9GZS9 411 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 PARP11Q9NR21 331 aa11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 TNRC18O15417 2968 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-201ENST00000331194 A0A1W2PP11 408 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 RAMP1O60894 148 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 VSIG8P0DPA2 414 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 SNCAP37840 140 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 TEX30Q5JUR7 227 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 TMEM268Q5VZI3 342 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 AWAT2Q6E213 333 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 TAF8Q7Z7C8 310 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 SFTPA2Q8IWL1 248 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 FAM3CQ92520 227 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 SOX7Q9BT81 388 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 UNKLQ9H9P5 680 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 RCL1Q9Y2P8 373 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 A0A1W2PP55 124 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 BTBD17A6NE02 478 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 ZNF217O75362 1048 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 OR2C1O95371 312 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 SFT2D2O95562 160 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 KNG1P01042 644 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 EDN3P14138 238 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 CTLA4P16410 223 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 FCGR2CP31995 323 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 TMEM33P57088 247 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 RPS23P62266 143 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 ZNHIT3Q15649 155 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 DEFB110Q30KQ9 67 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 FAHD2BQ6P2I3 314 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 FIGLAQ6QHK4 219 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 CATSPERDQ86XM0 798 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 FAM160A2Q8N612 972 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 MISP3Q96FF7 219 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 FAHD2AQ96GK7 314 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 RARRES2Q99969 163 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 MESP1Q9BRJ9 268 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 RTBDNQ9BSG5 229 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 GPR61Q9BZJ8 451 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 FGF22Q9HCT0 170 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 ZDHHC8Q9ULC8 765 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 GPR132Q9UNW8 380 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 STARD10Q9Y365 291 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 PIAS3Q9Y6X2 628 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 CT45A8P0DMV1 189 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 CT45A9P0DMV2 189 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 ZNF708P17019 499 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 S100A2P29034 98 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 RPL12P30050 165 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 TOMM20Q15388 145 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 CT45A2Q5DJT8 189 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms