RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 GPX7Q96SL4 187 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 GHITMQ9H3K2 345 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 AAMDCQ9H7C9 122 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 KIR3DX1Q9H7L2 352 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 UBE2ZQ9H832 354 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 URGCP-MRPS24S4R325 110 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 M0R296 226 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 SYNGR2O43760 224 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 CD99P14209 185 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 SMPD1P17405 629 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 NUBP1P53384 320 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 TEAD2Q15562 447 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 AADACL3Q5VUY0 350 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 DHRS7BQ6IAN0 325 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 LINC00346Q8IVM7 164 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 THAP3Q8WTV1 239 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 NEIL1Q96FI4 390 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 TIMP4Q99727 224 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 ST6GALNAC5Q9BVH7 336 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 TMED7Q9Y3B3 224 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 MRPL42Q9Y6G3 142 aaKnown RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 GREB1LQ9C091 1923 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 ANKRD20A5PA0PJZ0 165 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 SPINT2O43291 252 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 FZD6O60353 706 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 OR2C1O95371 312 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 CER1O95813 267 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 HMGN2P05204 90 aaKnown RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 RNASE1P07998 156 aaKnown RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 ACP5P13686 325 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 NAA10P41227 235 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 CRYBB2P43320 205 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 CDC34P49427 236 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-201ENST00000303395 PLAURQ03405 335 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 SHEQ5VZ18 495 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 CMTM4Q8IZR5 234 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 LRRC18Q8N456 261 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 OR10G3Q8NGC4 313 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 NT5CQ8TCD5 201 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 DDOQ99489 341 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 FAM234AQ9H0X4 552 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 CA10Q9NS85 328 aa4.78□□□□□ -1.64
SCN1A-201ENST00000303395 ARFGEF1Q9Y6D6 1849 aa4.78□□□□□ -1.65
SCN1A-201ENST00000303395 A8MXK9 166 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 DSCR3O14972 297 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 CLDN1O95832 211 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 HKR1P10072 659 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 CD8BP10966 210 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 SOX2P48431 317 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 ADIPOQQ15848 244 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 DEFB115Q30KQ5 88 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 MOB3CQ70IA8 216 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 NLGN4YQ8NFZ3 816 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-201ENST00000303395 OR5M1Q8NGP8 315 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 RASD2Q96D21 266 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 C4orf36Q96KX1 117 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 TAAR9Q96RI9 348 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 CHST11Q9NPF2 352 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 KCNE1BA0A087WTH5 132 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 LEUTXA8MZ59 168 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 NPIPB9F8W1W9 429 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 XRCC2O43543 280 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 VENTXO95231 258 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 C1orf105O95561 183 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 OPN1SWP03999 348 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 CD52P31358 61 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 KIR2DL1P43626 348 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-201ENST00000303395 KIR2DL2P43627 348 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-201ENST00000303395 ID4P47928 161 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 SLC14A1Q13336 389 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 PMCHL1Q16048 86 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 TXNDC8Q6A555 127 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 APCDD1Q8J025 514 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 ZBTB44Q8NCP5 570 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 MRPL13Q9BYD1 178 aaKnown RBP4.77□□□□□ -1.65
SCN1A-201ENST00000303395 LAT2Q9GZY6 243 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 MIXL1Q9H2W2 232 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 OR51I2Q9H344 312 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 PPP1R3EQ9H7J1 279 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 PDFQ9HBH1 243 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 TMEM242Q9NWH2 141 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 SLC5A10A0PJK1 596 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 CDC14CA4D256 554 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 MFSD2BA6NFX1 497 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 ZNF729A6NN14 1252 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-201ENST00000303395 ZNF814B7Z6K7 855 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 F5H5K5 113 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 ZNF593O00488 134 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-201ENST00000303395 DDNO94850 711 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-201ENST00000303395 SOX14O95416 240 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 STAG3L3P0CL85 134 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 EPHA8P29322 1005 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-201ENST00000303395 OR10J1P30954 320 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 SDHAP31040 664 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 SYPL1Q16563 259 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 PLAC9Q5JTB6 97 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 OTOP2Q7RTS6 562 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 RPS19BP1Q86WX3 136 aaKnown RBP4.77□□□□□ -1.65
SCN1A-201ENST00000303395 PTOV1Q86YD1 416 aa4.77□□□□□ -1.65
SCN1A-201ENST00000303395 CELF2-AS1Q8N7Q2 184 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms