RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 OR5L2Q8NGL0 311 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 LRFN5Q96NI6 719 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 SUCNR1Q9BXA5 334 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 IGHV1OR15-9A0A0B4J2B8 117 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 CD96P40200 585 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 CAPZBP47756 277 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 MPPED2Q15777 294 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 TMEM128Q5BJH2 165 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 RTL6Q6ICC9 239 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 ZNF770Q6IQ21 691 aaPredicted RBP13.83□□□□□ -0.2
SHH-201ENST00000297261 VN1R4Q7Z5H5 301 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 GPBAR1Q8TDU6 330 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 SGK3Q96BR1 496 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 ZNF251Q9BRH9 671 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 DUSP23Q9BVJ7 150 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 CHST6Q9GZX3 395 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 ENY2Q9NPA8 101 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 MT-ND4LP03901 98 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 POLR2HP52434 150 aaKnown RBP13.83□□□□□ -0.2
SHH-201ENST00000297261 C1orf140Q5VVS0 124 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 LCN15Q6UWW0 184 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 Q7L0L9 218 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 LINC00518Q8N0U6 118 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 UBAC2Q8NBM4 344 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 STT3BQ8TCJ2 826 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 FBXO17Q96EF6 278 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 GCM1Q9NP62 436 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 FGF21Q9NSA1 209 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 COL4A6Q14031 1691 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 A6NLC8 198 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 PPP5D1E7EU14 171 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 GPANK1O95872 356 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 G0S2P27469 103 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 DPP4P27487 766 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 HOXC12P31275 282 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 PPP1CAP62136 330 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 ELAVL1Q15717 326 aaKnown RBP13.83□□□□□ -0.2
SHH-201ENST00000297261 SLC25A30Q5SVS4 291 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 LAMTOR1Q6IAA8 161 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 BATF2Q8N1L9 274 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 NECAP1Q8NC96 275 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 WNT2BQ93097 391 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 LCORQ96JN0 433 aaPredicted RBP13.83□□□□□ -0.2
SHH-201ENST00000297261 TMPRSS5Q9H3S3 457 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 PADI1Q9ULC6 663 aa13.83□□□□□ -0.2
SHH-201ENST00000297261 PRAMEF25A6NGN4 478 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 RFC3P40938 356 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 NR0B2Q15466 257 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 WFDC6Q9BQY6 131 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 EGR3Q06889 387 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 MLC1Q15049 377 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 GUCA2BQ16661 112 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 TMEM176BQ3YBM2 270 aaPredicted RBP13.82□□□□□ -0.2
SHH-201ENST00000297261 WDR38Q5JTN6 314 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 OR2L13Q8N349 312 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 NAA11Q9BSU3 229 aaPredicted RBP13.82□□□□□ -0.2
SHH-201ENST00000297261 CABLES2Q9BTV7 478 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 ABHD6Q9BV23 337 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 FAM221AA4D161 298 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 A8MVM7 634 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 GSTZ1O43708 216 aaPredicted RBP13.82□□□□□ -0.2
SHH-201ENST00000297261 WNT11O96014 354 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 SEMG1P04279 462 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 FABP4P15090 132 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 PRSS41Q7RTY9 318 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 MITD1Q8WV92 249 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 SEH1LQ96EE3 360 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 PHYHIPLQ96FC7 376 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 OR2A5Q96R48 311 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 hCG_1809904A0A1W2PP81 198 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 A0A1W2PR64 198 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 A0A1W2PRV1 198 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 ADAP1O75689 374 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 TMIGD3P0DMS9 266 aaPredicted RBP13.82□□□□□ -0.2
SHH-201ENST00000297261 MYF5P13349 255 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 NKX2-1P43699 371 aaPredicted RBP13.82□□□□□ -0.2
SHH-201ENST00000297261 RAB1AP62820 205 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 PPIAP62937 165 aaKnown RBP13.82□□□□□ -0.2
SHH-201ENST00000297261 DCAF12L2Q5VW00 463 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 SFTPA2Q8IWL1 248 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 CA13Q8N1Q1 262 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 NT5CQ8TCD5 201 aa13.82□□□□□ -0.2
SHH-201ENST00000297261 A0A1W2PPV4 95 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 HTD2P86397 168 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 MFAP5Q13361 173 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 RAB32Q13637 225 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 KCNIP4Q6PIL6 250 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 UBE3DQ7Z6J8 389 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 FAM219AQ8IW50 185 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 OR11G2Q8NGC1 345 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 EDAQ92838 391 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 TANC1Q9C0D5 1861 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 GABREP78334 506 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 INPP5JQ15735 1006 aaPredicted RBP13.81□□□□□ -0.2
SHH-201ENST00000297261 NPSR1Q6W5P4 371 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 GVQW1Q8N7I0 195 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 EMG1Q92979 244 aaKnown RBP13.81□□□□□ -0.2
SHH-201ENST00000297261 SRPK3Q9UPE1 567 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 H7BYZ3 331 aa13.81□□□□□ -0.2
SHH-201ENST00000297261 CD1CP29017 333 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms