RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 ABHD3Q8WU67 409 aa13.46□□□□□ -0.25
SF3B4-201ENST00000271628 MS4A3Q96HJ5 214 aa13.46□□□□□ -0.25
SF3B4-201ENST00000271628 SLC6A15Q9H2J7 730 aa13.46□□□□□ -0.25
SF3B4-201ENST00000271628 TMEM138Q9NPI0 162 aa13.46□□□□□ -0.25
SF3B4-201ENST00000271628 NKIRAS2Q9NYR9 191 aa13.46□□□□□ -0.25
SF3B4-201ENST00000271628 PLEK2Q9NYT0 353 aa13.46□□□□□ -0.25
SF3B4-201ENST00000271628 NOSIPQ9Y314 301 aaKnown RBP13.46□□□□□ -0.25
SF3B4-201ENST00000271628 ZNF292O60281 2723 aa13.46□□□□□ -0.25
SF3B4-201ENST00000271628 DMXL1Q9Y485 3027 aa13.46□□□□□ -0.26
SF3B4-201ENST00000271628 A0A1B0GTI1 187 aa13.46□□□□□ -0.26
SF3B4-201ENST00000271628 DCDC2BA2VCK2 349 aa13.46□□□□□ -0.26
SF3B4-201ENST00000271628 XRCC3O43542 346 aa13.46□□□□□ -0.26
SF3B4-201ENST00000271628 MRPL33O75394 65 aaKnown RBP13.46□□□□□ -0.26
SF3B4-201ENST00000271628 IFNA7P01567 189 aa13.46□□□□□ -0.26
SF3B4-201ENST00000271628 HPXP02790 462 aa13.46□□□□□ -0.26
SF3B4-201ENST00000271628 ERCC1P07992 297 aaPredicted RBP13.46□□□□□ -0.26
SF3B4-201ENST00000271628 BDKRB2P30411 391 aa13.46□□□□□ -0.26
SF3B4-201ENST00000271628 NOVA1P51513 510 aaKnown RBP13.46□□□□□ -0.26
SF3B4-201ENST00000271628 GLYATL3Q5SZD4 288 aa13.46□□□□□ -0.26
SF3B4-201ENST00000271628 ZNF813Q6ZN06 617 aa13.46□□□□□ -0.26
SF3B4-201ENST00000271628 DOK3Q7L591 496 aa13.46□□□□□ -0.26
SF3B4-201ENST00000271628 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.46□□□□□ -0.26
SF3B4-201ENST00000271628 SPTSSAQ969W0 71 aa13.46□□□□□ -0.26
SF3B4-201ENST00000271628 ZNF837Q96EG3 531 aaPredicted RBP13.46□□□□□ -0.26
SF3B4-201ENST00000271628 RNF122Q9H9V4 155 aa13.46□□□□□ -0.26
SF3B4-201ENST00000271628 NPDC1Q9NQX5 325 aaPredicted RBP13.46□□□□□ -0.26
SF3B4-201ENST00000271628 TMEM38BQ9NVV0 291 aa13.46□□□□□ -0.26
SF3B4-201ENST00000271628 KLK11Q9UBX7 282 aa13.46□□□□□ -0.26
SF3B4-201ENST00000271628 AUP1Q9Y679 476 aa13.46□□□□□ -0.26
SF3B4-201ENST00000271628 OR6C65A6NJZ3 312 aa13.45□□□□□ -0.26
SF3B4-201ENST00000271628 CPN1P15169 458 aa13.45□□□□□ -0.26
SF3B4-201ENST00000271628 ZNF20P17024 532 aa13.45□□□□□ -0.26
SF3B4-201ENST00000271628 CCL1P22362 96 aa13.45□□□□□ -0.26
SF3B4-201ENST00000271628 OTX1P32242 354 aaPredicted RBP13.45□□□□□ -0.26
SF3B4-201ENST00000271628 ZP1P60852 638 aa13.45□□□□□ -0.26
SF3B4-201ENST00000271628 SPOCK1Q08629 439 aa13.45□□□□□ -0.26
SF3B4-201ENST00000271628 ECH1Q13011 328 aa13.45□□□□□ -0.26
SF3B4-201ENST00000271628 C1orf100Q5SVJ3 147 aa13.45□□□□□ -0.26
SF3B4-201ENST00000271628 FAM57BQ71RH2 274 aa13.45□□□□□ -0.26
SF3B4-201ENST00000271628 PGAP1Q75T13 922 aa13.45□□□□□ -0.26
SF3B4-201ENST00000271628 COMMD2Q86X83 199 aa13.45□□□□□ -0.26
SF3B4-201ENST00000271628 CCDC28AQ8IWP9 274 aa13.45□□□□□ -0.26
SF3B4-201ENST00000271628 OR8H3Q8N146 312 aa13.45□□□□□ -0.26
SF3B4-201ENST00000271628 OR1J2Q8NGS2 313 aa13.45□□□□□ -0.26
SF3B4-201ENST00000271628 OR2T35Q8NGX2 323 aa13.45□□□□□ -0.26
SF3B4-201ENST00000271628 SLC25A28Q96A46 364 aa13.45□□□□□ -0.26
SF3B4-201ENST00000271628 FBXO17Q96EF6 278 aa13.45□□□□□ -0.26
SF3B4-201ENST00000271628 FOXB1Q99853 325 aa13.45□□□□□ -0.26
SF3B4-201ENST00000271628 LINC00470Q9BZP3 86 aa13.45□□□□□ -0.26
SF3B4-201ENST00000271628 GPR84Q9NQS5 396 aa13.45□□□□□ -0.26
SF3B4-201ENST00000271628 MRPL15Q9P015 296 aaKnown RBP13.45□□□□□ -0.26
SF3B4-201ENST00000271628 F5H5K5 113 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 SLC2A1P11166 492 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 RAB3AP20336 220 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 C4BPBP20851 252 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 VEGFCP49767 419 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 TNFSF10P50591 281 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 ZNF81P51508 661 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 MECP2P51608 486 aaKnown RBP13.44□□□□□ -0.26
SF3B4-201ENST00000271628 ARPC4P59998 168 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 SCRN3Q0VDG4 424 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 NRN1LQ496H8 165 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 DNM1P46Q6ZS02 220 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 CHMP1BQ7LBR1 199 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 SPICQ8N5J4 248 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 JAGN1Q8N5M9 183 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 CCDC54Q8NEL0 328 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 OR1M1Q8NGA1 313 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 OR51A2Q8NGJ7 313 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 PTX4Q96A99 478 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 PGAM5Q96HS1 289 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 ALKBH3Q96Q83 286 aaPredicted RBP13.44□□□□□ -0.26
SF3B4-201ENST00000271628 PRRG4Q9BZD6 226 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 METTL17Q9H7H0 456 aaPredicted RBP13.44□□□□□ -0.26
SF3B4-201ENST00000271628 NOX3Q9HBY0 568 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 GPR35Q9HC97 309 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 EIF3KQ9UBQ5 218 aaKnown RBP13.44□□□□□ -0.26
SF3B4-201ENST00000271628 NCOA6Q14686 2063 aaPredicted RBP13.44□□□□□ -0.26
SF3B4-201ENST00000271628 A0A0U1RQV5 110 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 LMX1BO60663 402 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 CCL11P51671 97 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 AP2S1P53680 142 aaPredicted RBP13.44□□□□□ -0.26
SF3B4-201ENST00000271628 TAS2R20P59543 309 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 PCBD1P61457 104 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 RAB35Q15286 201 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 STK11Q15831 433 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 CEACAM16Q2WEN9 425 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 ZNF529Q6P280 563 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 GLDNQ6ZMI3 551 aaPredicted RBP13.44□□□□□ -0.26
SF3B4-201ENST00000271628 LYPD6Q86Y78 171 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 ADAT3Q96EY9 351 aaPredicted RBP13.44□□□□□ -0.26
SF3B4-201ENST00000271628 UQCC2Q9BRT2 126 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 OR10A4Q9H209 315 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 SLCO5A1Q9H2Y9 848 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 LDAHQ9H6V9 325 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 FLVCR2Q9UPI3 526 aa13.44□□□□□ -0.26
SF3B4-201ENST00000271628 ZNF724A8MTY0 619 aa13.43□□□□□ -0.26
SF3B4-201ENST00000271628 SGCEO43556 437 aa13.43□□□□□ -0.26
SF3B4-201ENST00000271628 CTAG2O75638 210 aa13.43□□□□□ -0.26
SF3B4-201ENST00000271628 CRYZL1O95825 349 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms