RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 BCL2L2Q92843 193 aaPredicted RBP14.7□□□□□ -0.06
CLN3-252ENST00000636907 CCDC32Q9BV29 185 aa14.7□□□□□ -0.06
CLN3-252ENST00000636907 OR10A2Q9H208 303 aa14.7□□□□□ -0.06
CLN3-252ENST00000636907 DOCK7Q96N67 2140 aa14.7□□□□□ -0.06
CLN3-252ENST00000636907 PIEZO1Q92508 2521 aa14.69□□□□□ -0.06
CLN3-252ENST00000636907 WDR1O75083 606 aa14.69□□□□□ -0.06
CLN3-252ENST00000636907 CD79AP11912 226 aa14.69□□□□□ -0.06
CLN3-252ENST00000636907 GABRA1P14867 456 aa14.69□□□□□ -0.06
CLN3-252ENST00000636907 ZNF20P17024 532 aa14.69□□□□□ -0.06
CLN3-252ENST00000636907 IGHV1-2P23083 117 aa14.69□□□□□ -0.06
CLN3-252ENST00000636907 GNALP38405 381 aa14.69□□□□□ -0.06
CLN3-252ENST00000636907 DDOSTP39656 456 aa14.69□□□□□ -0.06
CLN3-252ENST00000636907 P2RY14Q15391 338 aa14.69□□□□□ -0.06
CLN3-252ENST00000636907 LYSMD2Q8IV50 215 aa14.69□□□□□ -0.06
CLN3-252ENST00000636907 OR4M1Q8NGD0 313 aa14.69□□□□□ -0.06
CLN3-252ENST00000636907 OR52H1Q8NGJ2 320 aa14.69□□□□□ -0.06
CLN3-252ENST00000636907 SGK3Q96BR1 496 aa14.69□□□□□ -0.06
CLN3-252ENST00000636907 NKX3-1Q99801 234 aaPredicted RBP14.69□□□□□ -0.06
CLN3-252ENST00000636907 PPP1R3EQ9H7J1 279 aa14.69□□□□□ -0.06
CLN3-252ENST00000636907 C14orf119Q9NWQ9 140 aa14.69□□□□□ -0.06
CLN3-252ENST00000636907 OR5V1Q9UGF6 321 aa14.69□□□□□ -0.06
CLN3-252ENST00000636907 STEAP1Q9UHE8 339 aa14.69□□□□□ -0.06
CLN3-252ENST00000636907 ATPIF1Q9UII2 106 aa14.69□□□□□ -0.06
CLN3-252ENST00000636907 FAM215AQ9Y5M1 114 aa14.69□□□□□ -0.06
CLN3-252ENST00000636907 APOA1P02647 267 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 LCATP04180 440 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 CALCBP10092 127 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 CFPP27918 469 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 ARR3P36575 388 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 RAB1AP62820 205 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 IL18Q14116 193 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 TBRG1Q3YBR2 411 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 C1orf185Q5T7R7 199 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 STEAP3Q658P3 488 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 GLT8D1Q68CQ7 371 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 TMEM53Q6P2H8 277 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 OR8H2Q8N162 312 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 DTX3Q8N9I9 347 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 OR1M1Q8NGA1 313 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 MRI1Q9BV20 369 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 B3GNT2Q9NY97 397 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 LOC100509620A0A075B734 347 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 MEGF11A6BM72 1044 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 FIGNL2A6NMB9 653 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 SLC17A2O00624 439 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 TNFSF13O75888 250 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 DHRS3O75911 302 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 TOXO94900 526 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 UBL3O95164 117 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 CD37P11049 281 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 ZNF12P17014 697 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 PTGER4P35408 488 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 PER3P56645 1201 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 BAK1Q16611 211 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 RGS21Q2M5E4 152 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 PYDC2Q56P42 97 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 UBE2NLQ5JXB2 153 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 ZNF529Q6P280 563 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 Q6ZSR3 168 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 Q6ZT83 130 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 RPRMLQ8N4K4 120 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 OR5D14Q8NGL3 314 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 OR13C9Q8NGT0 318 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 OR2AE1Q8NHA4 323 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 FAM57AQ8TBR7 257 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 CMTM3Q96MX0 182 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 PLEKHA1Q9HB21 404 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 CGGBP1Q9UFW8 167 aaPredicted RBP14.68□□□□□ -0.06
CLN3-252ENST00000636907 V9GYS6 101 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 BSNQ9UPA5 3926 aa14.68□□□□□ -0.06
CLN3-252ENST00000636907 GTF3C1Q12789 2109 aa14.67□□□□□ -0.06
CLN3-252ENST00000636907 CNOT4O95628 575 aaKnown RBP14.67□□□□□ -0.06
CLN3-252ENST00000636907 COX5BP10606 129 aa14.67□□□□□ -0.06
CLN3-252ENST00000636907 RAB3AP20336 220 aa14.67□□□□□ -0.06
CLN3-252ENST00000636907 PTBP1P26599 531 aaKnown RBP eCLIP14.67□□□□□ -0.06
CLN3-252ENST00000636907 BDKRB2P30411 391 aa14.67□□□□□ -0.06
CLN3-252ENST00000636907 TALDO1P37837 337 aa14.67□□□□□ -0.06
CLN3-252ENST00000636907 RAB11BQ15907 218 aa14.67□□□□□ -0.06
CLN3-252ENST00000636907 FAM166AQ6J272 317 aa14.67□□□□□ -0.06
CLN3-252ENST00000636907 NKAIN3Q8N8D7 197 aa14.67□□□□□ -0.06
CLN3-252ENST00000636907 GDPD1Q8N9F7 314 aa14.67□□□□□ -0.06
CLN3-252ENST00000636907 SLC25A38Q96DW6 304 aa14.67□□□□□ -0.06
CLN3-252ENST00000636907 REEP6Q96HR9 211 aa14.67□□□□□ -0.06
CLN3-252ENST00000636907 SP140LQ9H930 580 aa14.67□□□□□ -0.06
CLN3-252ENST00000636907 PLSCR4Q9NRQ2 329 aa14.67□□□□□ -0.06
CLN3-252ENST00000636907 ATMQ13315 3056 aa14.66□□□□□ -0.06
CLN3-252ENST00000636907 RAD51DO75771 328 aa14.66□□□□□ -0.06
CLN3-252ENST00000636907 LYZL6O75951 148 aa14.66□□□□□ -0.06
CLN3-252ENST00000636907 CCL2P13500 99 aa14.66□□□□□ -0.06
CLN3-252ENST00000636907 RIN1Q13671 783 aa14.66□□□□□ -0.06
CLN3-252ENST00000636907 GLYATL3Q5SZD4 288 aa14.66□□□□□ -0.06
CLN3-252ENST00000636907 UNQ6494/PRO21346Q6UXR6 183 aa14.66□□□□□ -0.06
CLN3-252ENST00000636907 DPPA2Q7Z7J5 298 aa14.66□□□□□ -0.06
CLN3-252ENST00000636907 LYPD6Q86Y78 171 aa14.66□□□□□ -0.06
CLN3-252ENST00000636907 ZNF584Q8IVC4 421 aa14.66□□□□□ -0.06
CLN3-252ENST00000636907 CMTM4Q8IZR5 234 aa14.66□□□□□ -0.06
CLN3-252ENST00000636907 OR51D1Q8NGF3 324 aa14.66□□□□□ -0.06
CLN3-252ENST00000636907 NANOS1Q8WY41 292 aaKnown RBP14.66□□□□□ -0.06
CLN3-252ENST00000636907 SLC25A28Q96A46 364 aa14.66□□□□□ -0.06
CLN3-252ENST00000636907 STARD4Q96DR4 205 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms