RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 CDAP32320 146 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 VAMP2P63027 116 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 CLEC9AQ6UXN8 241 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 OR56B1Q8NGI3 324 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 MFRPQ9BY79 579 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 PBOV1Q9GZY1 135 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 WDR13Q9H1Z4 485 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 IFT22Q9H7X7 185 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 FBRSQ9HAH7 460 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 GPR84Q9NQS5 396 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 WIF1Q9Y5W5 379 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 HEATR5AQ86XA9 2040 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 TRAV14DV4A0A0A6YYC5 116 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 DNASE2O00115 360 aaPredicted RBP11.28□□□□□ -0.6
LIG1-221ENST00000613670 GLRA1P23415 457 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 S100A2P29034 98 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 HSF1Q00613 529 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 INSM1Q01101 510 aaPredicted RBP11.28□□□□□ -0.6
LIG1-221ENST00000613670 ISXQ2M1V0 245 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 H1FNTQ75WM6 255 aaPredicted RBP11.28□□□□□ -0.6
LIG1-221ENST00000613670 LRRC18Q8N456 261 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 ZNF565Q8N9K5 539 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 SLC17A5Q9NRA2 495 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 OBP2AQ9NY56 170 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 FBXO7Q9Y3I1 522 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 LAMA2P24043 3122 aaKnown RBP11.27□□□□□ -0.6
LIG1-221ENST00000613670 TRBV5-7A0A0A0MS05 114 aa11.27□□□□□ -0.6
LIG1-221ENST00000613670 OR6C76A6NM76 312 aa11.27□□□□□ -0.6
LIG1-221ENST00000613670 H0YIG0 161 aa11.27□□□□□ -0.6
LIG1-221ENST00000613670 STMND1H3BQB6 276 aa11.27□□□□□ -0.6
LIG1-221ENST00000613670 OR13C7P0DN81 318 aa11.27□□□□□ -0.6
LIG1-221ENST00000613670 FCGR2AP12318 317 aa11.27□□□□□ -0.6
LIG1-221ENST00000613670 RPS10P46783 165 aaKnown RBP11.27□□□□□ -0.6
LIG1-221ENST00000613670 SCAND1P57086 179 aa11.27□□□□□ -0.6
LIG1-221ENST00000613670 HERV-K104P61576 105 aa11.27□□□□□ -0.6
LIG1-221ENST00000613670 PJVKQ0ZLH3 352 aa11.27□□□□□ -0.6
LIG1-221ENST00000613670 TMEM128Q5BJH2 165 aa11.27□□□□□ -0.6
LIG1-221ENST00000613670 P4HA3Q7Z4N8 544 aa11.27□□□□□ -0.6
LIG1-221ENST00000613670 NAA40Q86UY6 237 aa11.27□□□□□ -0.6
LIG1-221ENST00000613670 STX12Q86Y82 276 aa11.27□□□□□ -0.6
LIG1-221ENST00000613670 LDLRAD3Q86YD5 345 aa11.27□□□□□ -0.6
LIG1-221ENST00000613670 BATF2Q8N1L9 274 aa11.27□□□□□ -0.6
LIG1-221ENST00000613670 CCNL2Q96S94 520 aaPredicted RBP11.27□□□□□ -0.6
LIG1-221ENST00000613670 UQCC1Q9NVA1 299 aa11.27□□□□□ -0.6
LIG1-221ENST00000613670 A0A1W2PNR3 127 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 A0A1W2PPC1 479 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 FAM221BA6H8Z2 402 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 FOXS1O43638 330 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 SFTA3P0C7M3 94 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 ASAH2BP0C7U1 165 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 ELAVL1Q15717 326 aaKnown RBP11.27□□□□□ -0.61
LIG1-221ENST00000613670 RPL7L1Q6DKI1 246 aaKnown RBP11.27□□□□□ -0.61
LIG1-221ENST00000613670 ST7LQ8TDW4 575 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 C11orf40Q8WZ69 217 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 EDAQ92838 391 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 FBXO17Q96EF6 278 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 NICN1Q9BSH3 213 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 OR10A2Q9H208 303 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 SPACA1Q9HBV2 294 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 RNASEK-C17orf49H0YIS7 233 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 TGFBR3LH3BV60 316 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 NUDT21O43809 227 aaKnown RBP11.27□□□□□ -0.61
LIG1-221ENST00000613670 DAOP14920 347 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 FCGR2CP31995 323 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 KIR2DL1P43626 348 aaPredicted RBP11.27□□□□□ -0.61
LIG1-221ENST00000613670 NPBWR1P48145 328 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 PHLDA2Q53GA4 152 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 UQCC3Q6UW78 93 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 OR5AP2Q8NGF4 316 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 S100PBPQ96BU1 408 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 ARL5BQ96KC2 179 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 UQCC2Q9BRT2 126 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 ALX4Q9H161 411 aaPredicted RBP11.27□□□□□ -0.61
LIG1-221ENST00000613670 ANKRD10Q9NXR5 420 aa11.27□□□□□ -0.61
LIG1-221ENST00000613670 CCDC85CA6NKD9 419 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 DUS4LO95620 317 aaKnown RBP11.26□□□□□ -0.61
LIG1-221ENST00000613670 DIRAS3O95661 229 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 CHRM2P08172 466 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 PLAURQ03405 335 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 EGR4Q05215 589 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.26□□□□□ -0.61
LIG1-221ENST00000613670 PGAP1Q75T13 922 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 SLC25A42Q86VD7 318 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 FAM213BQ8TBF2 198 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 TCTEX1D2Q8WW35 142 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 ISOC2Q96AB3 205 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 PHYHIPLQ96FC7 376 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 ARHGAP5-AS1Q96IT6 56 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 FOXQ1Q9C009 403 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 FN3KRPQ9HA64 309 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 MED9Q9NWA0 146 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 CYB5R1Q9UHQ9 305 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 AUP1Q9Y679 476 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 FAM221AA4D161 298 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 SOCS1O15524 211 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 XRCC2O43543 280 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 OPRM1P35372 400 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 GNMTQ14749 295 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 RSU1Q15404 277 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 C14orf28Q4W4Y0 310 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms