RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CCDC36Q8IYA8 594 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 OR52H1Q8NGJ2 320 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 OR13C3Q8NGS6 347 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 DMRTA2Q96SC8 542 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 C1QTNF5Q9BXJ0 243 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 C6orf62Q9GZU0 229 aaPredicted RBP12.39□□□□□ -0.43
USP39-220ENST00000613444 SH3BGRL2Q9UJC5 107 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 AK6Q9Y3D8 172 aaKnown RBP12.39□□□□□ -0.43
USP39-220ENST00000613444 CTDSP2O14595 271 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 ZNF14P17017 642 aaPredicted RBP12.39□□□□□ -0.43
USP39-220ENST00000613444 FSTP19883 344 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 STOMP27105 288 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 SLC25A35Q3KQZ1 300 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 SFXN4Q6P4A7 337 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 PARP16Q8N5Y8 322 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 OR1J2Q8NGS2 313 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 OR14K1Q8NGZ2 314 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 NANOS1Q8WY41 292 aaKnown RBP12.39□□□□□ -0.43
USP39-220ENST00000613444 SGK3Q96BR1 496 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 ADAT3Q96EY9 351 aaPredicted RBP12.39□□□□□ -0.43
USP39-220ENST00000613444 MS4A3Q96HJ5 214 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 SMURF1Q9HCE7 757 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 IGSF10Q6WRI0 2623 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 A0A1B0GVI7 797 aa12.38□□□□□ -0.43
USP39-220ENST00000613444 A0A1W2PR80 420 aa12.38□□□□□ -0.43
USP39-220ENST00000613444 CD2P06729 351 aa12.38□□□□□ -0.43
USP39-220ENST00000613444 CCL2P13500 99 aa12.38□□□□□ -0.43
USP39-220ENST00000613444 OPRM1P35372 400 aa12.38□□□□□ -0.43
USP39-220ENST00000613444 MOGQ16653 247 aa12.38□□□□□ -0.43
USP39-220ENST00000613444 LUZP2Q86TE4 346 aa12.38□□□□□ -0.43
USP39-220ENST00000613444 MYPOPQ86VE0 399 aaPredicted RBP12.38□□□□□ -0.43
USP39-220ENST00000613444 WBP1Q96G27 269 aa12.38□□□□□ -0.43
USP39-220ENST00000613444 TCF7L1Q9HCS4 588 aa12.38□□□□□ -0.43
USP39-220ENST00000613444 AKIP1Q9NQ31 210 aa12.38□□□□□ -0.43
USP39-220ENST00000613444 ZNF629Q9UEG4 869 aaPredicted RBP12.38□□□□□ -0.43
USP39-220ENST00000613444 NOTOA8MTQ0 251 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 A8MXE2 369 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 MSTNO14793 375 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 TBX1O43435 398 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 LCATP04180 440 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 SERPINA5P05154 406 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 EPXP11678 715 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 DOK3Q7L591 496 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 LIX1LQ8IVB5 337 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 C17orf78Q8N4C9 275 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 FGGYQ96C11 551 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 VKORC1Q9BQB6 163 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 OR10A2Q9H208 303 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 TAS2R4Q9NYW5 299 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 FOXJ3Q9UPW0 622 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 C5orf49A4QMS7 147 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 ATF1P18846 271 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 BMP5P22003 454 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 UBE2NP61088 152 aaKnown RBP12.37□□□□□ -0.43
USP39-220ENST00000613444 PLP2Q04941 152 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 GFOD2Q3B7J2 385 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 ZNF529Q6P280 563 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 PAQR4Q8N4S7 273 aaPredicted RBP12.37□□□□□ -0.43
USP39-220ENST00000613444 OR2AE1Q8NHA4 323 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 FAM71F1Q96KD3 344 aaPredicted RBP12.37□□□□□ -0.43
USP39-220ENST00000613444 MEMO1Q9Y316 297 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 V9GYS6 101 aa12.37□□□□□ -0.43
USP39-220ENST00000613444 CACNA1BQ00975 2339 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 A6NIN4 97 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 CELA3BP08861 270 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 CD37P11049 281 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 SLC2A2P11168 524 aaPredicted RBP12.36□□□□□ -0.43
USP39-220ENST00000613444 BMP4P12644 408 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 CFL1P23528 166 aaKnown RBP12.36□□□□□ -0.43
USP39-220ENST00000613444 PEX19P40855 299 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 CA7P43166 264 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 TNK1Q13470 666 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 GLYATL3Q5SZD4 288 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 BHLHA15Q7RTS1 189 aaPredicted RBP12.36□□□□□ -0.43
USP39-220ENST00000613444 CROCCP3Q8IVE0 287 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 MFSD4AQ8N468 514 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 RELL2Q8NC24 303 aaPredicted RBP12.36□□□□□ -0.43
USP39-220ENST00000613444 DNAAF1Q8NEP3 725 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 OR51A2Q8NGJ7 313 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 AP3S1Q92572 193 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 MIXL1Q9H2W2 232 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 PIGMQ9H3S5 423 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 JKAMPQ9P055 326 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 CRNNQ9UBG3 495 aaPredicted RBP12.36□□□□□ -0.43
USP39-220ENST00000613444 DAPK2Q9UIK4 370 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 PEX16Q9Y5Y5 336 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 HEATR1Q9H583 2144 aaKnown RBP12.36□□□□□ -0.43
USP39-220ENST00000613444 LOC390937A0A1W2PQ73 354 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 PDCD5O14737 125 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 DHRS3O75911 302 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 IGKV3-15P01624 115 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 MAS1P04201 325 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 PSMB1P20618 241 aaKnown RBP12.36□□□□□ -0.43
USP39-220ENST00000613444 DDOSTP39656 456 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 IDNKQ5T6J7 187 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 MRGPRGQ86SM5 289 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 COMMD2Q86X83 199 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 LYPD6Q86Y78 171 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 SPSB4Q96A44 273 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 SLITRK2Q9H156 845 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms