RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 CNN2Q99439 309 aaKnown RBP16.45■□□□□ 0.22
UPF1-212ENST00000601689 TMEFF2Q9UIK5 374 aaPredicted RBP16.45■□□□□ 0.22
UPF1-212ENST00000601689 SNTNA6NMZ2 147 aa16.44■□□□□ 0.22
UPF1-212ENST00000601689 H3BNX3 289 aa16.44■□□□□ 0.22
UPF1-212ENST00000601689 EI24O14681 340 aa16.44■□□□□ 0.22
UPF1-212ENST00000601689 ANPEPP15144 967 aa16.44■□□□□ 0.22
UPF1-212ENST00000601689 ATP6V1E1P36543 226 aa16.44■□□□□ 0.22
UPF1-212ENST00000601689 POU4F2Q12837 409 aa16.44■□□□□ 0.22
UPF1-212ENST00000601689 FAM166AQ6J272 317 aa16.44■□□□□ 0.22
UPF1-212ENST00000601689 DEGS2Q6QHC5 323 aa16.44■□□□□ 0.22
UPF1-212ENST00000601689 FTMTQ8N4E7 242 aa16.44■□□□□ 0.22
UPF1-212ENST00000601689 TRUB1Q8WWH5 349 aaKnown RBP16.44■□□□□ 0.22
UPF1-212ENST00000601689 EME1Q96AY2 570 aa16.44■□□□□ 0.22
UPF1-212ENST00000601689 SLC30A2Q9BRI3 323 aa16.44■□□□□ 0.22
UPF1-212ENST00000601689 USE1Q9NZ43 259 aa16.44■□□□□ 0.22
UPF1-212ENST00000601689 DNAJC27Q9NZQ0 273 aa16.44■□□□□ 0.22
UPF1-212ENST00000601689 KCNS2Q9ULS6 477 aa16.44■□□□□ 0.22
UPF1-212ENST00000601689 PPP1R3CQ9UQK1 317 aa16.44■□□□□ 0.22
UPF1-212ENST00000601689 DYSFO75923 2080 aa16.44■□□□□ 0.22
UPF1-212ENST00000601689 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP16.43■□□□□ 0.22
UPF1-212ENST00000601689 LOC100289279A0A1B0GTE1 492 aa16.43■□□□□ 0.22
UPF1-212ENST00000601689 LILRA1O75019 489 aa16.43■□□□□ 0.22
UPF1-212ENST00000601689 ZNF254O75437 659 aa16.43■□□□□ 0.22
UPF1-212ENST00000601689 RP2O75695 350 aa16.43■□□□□ 0.22
UPF1-212ENST00000601689 ALPLP05186 524 aa16.43■□□□□ 0.22
UPF1-212ENST00000601689 IGHV4-31P0DP07 118 aa16.43■□□□□ 0.22
UPF1-212ENST00000601689 SLC2A1P11166 492 aa16.43■□□□□ 0.22
UPF1-212ENST00000601689 PCMT1P22061 227 aa16.43■□□□□ 0.22
UPF1-212ENST00000601689 OPRL1P41146 370 aa16.43■□□□□ 0.22
UPF1-212ENST00000601689 CDH15P55291 814 aa16.43■□□□□ 0.22
UPF1-212ENST00000601689 SNAI3Q3KNW1 292 aa16.43■□□□□ 0.22
UPF1-212ENST00000601689 ZBTB49Q6ZSB9 765 aa16.43■□□□□ 0.22
UPF1-212ENST00000601689 PQLC1Q8N2U9 271 aa16.43■□□□□ 0.22
UPF1-212ENST00000601689 RAB39BQ96DA2 213 aa16.43■□□□□ 0.22
UPF1-212ENST00000601689 OR2V2Q96R30 315 aa16.43■□□□□ 0.22
UPF1-212ENST00000601689 REPIN1Q9BWE0 567 aaKnown RBP16.43■□□□□ 0.22
UPF1-212ENST00000601689 RGCCQ9H4X1 137 aa16.43■□□□□ 0.22
UPF1-212ENST00000601689 WARS2Q9UGM6 360 aaKnown RBP16.43■□□□□ 0.22
UPF1-212ENST00000601689 ZNF391Q9UJN7 358 aa16.43■□□□□ 0.22
UPF1-212ENST00000601689 LRP5LA4QPB2 252 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 LRRC30A6NM36 301 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 ANKRD30BLA7E2S9 258 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 CD300LBA8K4G0 201 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 MRPL3P09001 348 aaKnown RBP16.42■□□□□ 0.22
UPF1-212ENST00000601689 PSKH1P11801 424 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 IRF2P14316 349 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 ALOX5APP20292 161 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 ZNF121P58317 390 aaPredicted RBP16.42■□□□□ 0.22
UPF1-212ENST00000601689 MVKQ03426 396 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 ZNF92Q03936 586 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 TMED1Q13445 227 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 OR8G1Q15617 311 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 TMEM255AQ5JRV8 349 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 GLYATL3Q5SZD4 288 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 C6orf52Q5T4I8 152 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 FAM57BQ71RH2 274 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 C1orf87Q8N0U7 546 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 CBR4Q8N4T8 237 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 LINC01356Q8N9X3 169 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 SPERTQ8NA61 448 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 ITLN1Q8WWA0 313 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 BRD7Q9NPI1 651 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 HAO2Q9NYQ3 351 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 MRPL15Q9P015 296 aaKnown RBP16.42■□□□□ 0.22
UPF1-212ENST00000601689 MTORP42345 2549 aa16.42■□□□□ 0.22
UPF1-212ENST00000601689 TANC2Q9HCD6 1990 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 ISPDA4D126 451 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 INAFM1C9JVW0 142 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 ZNF670-ZNF695F2Z2N8 137 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 GMDSO60547 372 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 LMX1BO60663 402 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 TGFAP01135 160 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 EPHA2P29317 976 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 RIDAP52758 137 aaKnown RBP16.41■□□□□ 0.22
UPF1-212ENST00000601689 TRIP10Q15642 601 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 AADACL4Q5VUY2 407 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 LRRN1Q6UXK5 716 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 Q6ZR03 302 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 KLBQ86Z14 1044 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 OR2AE1Q8NHA4 323 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 FAM81AQ8TBF8 368 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 ERGIC1Q969X5 290 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 REEP6Q96HR9 211 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 NARFLQ9H6Q4 476 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 TMEM106BQ9NUM4 274 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 TREM2Q9NZC2 230 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 IKZF2Q9UKS7 526 aa16.41■□□□□ 0.22
UPF1-212ENST00000601689 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.41■□□□□ 0.22
UPF1-212ENST00000601689 CCDC182A6NF36 153 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 ACOD1A6NK06 481 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 B4DSR2 109 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 ZNF16P17020 682 aaPredicted RBP16.4■□□□□ 0.22
UPF1-212ENST00000601689 HNF1AP20823 631 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 POLR2IP36954 125 aaKnown RBP16.4■□□□□ 0.22
UPF1-212ENST00000601689 EFNB1P98172 346 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 ZSCAN26Q16670 478 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 GFOD2Q3B7J2 385 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 ZNF829Q3KNS6 432 aaPredicted RBP16.4■□□□□ 0.22
UPF1-212ENST00000601689 MEDAGQ5VYS4 303 aa16.4■□□□□ 0.22
UPF1-212ENST00000601689 ZNF679Q8IYX0 411 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms