RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 PERPQ96FX8 193 aa16.53■□□□□ 0.24
UPF1-209ENST00000600310 PGAM5Q96HS1 289 aa16.53■□□□□ 0.24
UPF1-209ENST00000600310 VRK1Q99986 396 aaPredicted RBP16.53■□□□□ 0.24
UPF1-209ENST00000600310 REPIN1Q9BWE0 567 aaKnown RBP16.53■□□□□ 0.24
UPF1-209ENST00000600310 OR10A2Q9H208 303 aa16.53■□□□□ 0.24
UPF1-209ENST00000600310 CXXC4Q9H2H0 198 aa16.53■□□□□ 0.24
UPF1-209ENST00000600310 INPP5EQ9NRR6 644 aa16.53■□□□□ 0.24
UPF1-209ENST00000600310 PLCXD1Q9NUJ7 323 aa16.53■□□□□ 0.24
UPF1-209ENST00000600310 FAM206AQ9NX38 181 aa16.53■□□□□ 0.24
UPF1-209ENST00000600310 CGGBP1Q9UFW8 167 aaPredicted RBP16.53■□□□□ 0.24
UPF1-209ENST00000600310 RAB26Q9ULW5 256 aa16.53■□□□□ 0.24
UPF1-209ENST00000600310 POLQO75417 2590 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 USF3Q68DE3 2245 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 TBX1O43435 398 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 TIMM8AO60220 97 aaPredicted RBP16.52■□□□□ 0.24
UPF1-209ENST00000600310 NDUFS7O75251 213 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 SRSF10O75494 262 aaKnown RBP16.52■□□□□ 0.24
UPF1-209ENST00000600310 MT-ND5P03915 603 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 SELEP16581 610 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 MMP15P51511 669 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 ART1P52961 327 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 SNCBQ16143 134 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 CDONQ4KMG0 1287 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 OR2T2Q6IF00 324 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 PGAP1Q75T13 922 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 MRPL21Q7Z2W9 205 aaKnown RBP16.52■□□□□ 0.24
UPF1-209ENST00000600310 YIPF7Q8N8F6 280 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 OR2AE1Q8NHA4 323 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 SGK3Q96BR1 496 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 SORCS2Q96PQ0 1159 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 MYCBPQ99417 103 aaPredicted RBP16.52■□□□□ 0.24
UPF1-209ENST00000600310 ZNF649Q9BS31 505 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 JAM3Q9BX67 310 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 RAB1BQ9H0U4 201 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 RGCCQ9H4X1 137 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 OPA3Q9H6K4 179 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 CYSLTR2Q9NS75 346 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 ITGB1BP2Q9UKP3 347 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 R4GMQ9 66 aa16.52■□□□□ 0.24
UPF1-209ENST00000600310 ARFGEF3Q5TH69 2177 aa16.51■□□□□ 0.23
UPF1-209ENST00000600310 C17orf100A8MU93 164 aa16.51■□□□□ 0.23
UPF1-209ENST00000600310 IQCF6A8MYZ5 107 aa16.51■□□□□ 0.23
UPF1-209ENST00000600310 PNPP00491 289 aa16.51■□□□□ 0.23
UPF1-209ENST00000600310 NAT2P11245 290 aa16.51■□□□□ 0.23
UPF1-209ENST00000600310 DCKP27707 260 aa16.51■□□□□ 0.23
UPF1-209ENST00000600310 CSNK2BP67870 215 aa16.51■□□□□ 0.23
UPF1-209ENST00000600310 GALEQ14376 348 aa16.51■□□□□ 0.23
UPF1-209ENST00000600310 TIGD6Q17RP2 521 aa16.51■□□□□ 0.23
UPF1-209ENST00000600310 LIPNQ5VXI9 398 aa16.51■□□□□ 0.23
UPF1-209ENST00000600310 KCTD20Q7Z5Y7 419 aa16.51■□□□□ 0.23
UPF1-209ENST00000600310 EGFL6Q8IUX8 553 aa16.51■□□□□ 0.23
UPF1-209ENST00000600310 ZCCHC24Q8N2G6 241 aaKnown RBP16.51■□□□□ 0.23
UPF1-209ENST00000600310 OR8B12Q8NGG6 310 aa16.51■□□□□ 0.23
UPF1-209ENST00000600310 GGHQ92820 318 aa16.51■□□□□ 0.23
UPF1-209ENST00000600310 MRPL48Q96GC5 212 aaKnown RBP16.51■□□□□ 0.23
UPF1-209ENST00000600310 ZNF184Q99676 751 aaPredicted RBP16.51■□□□□ 0.23
UPF1-209ENST00000600310 BARX1Q9HBU1 254 aaPredicted RBP16.51■□□□□ 0.23
UPF1-209ENST00000600310 ERVK13-1Q9NX77 482 aa16.51■□□□□ 0.23
UPF1-209ENST00000600310 PLSCR5A0PG75 271 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 EFCAB10A6NFE3 127 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 LOC110117498-PIK3R3F6TDL0 507 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 XPNPEP2O43895 674 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 FAM20BO75063 409 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 IGHV4-39P01824 125 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 ERCC1P07992 297 aaPredicted RBP16.5■□□□□ 0.23
UPF1-209ENST00000600310 PIPP12273 146 aaPredicted RBP16.5■□□□□ 0.23
UPF1-209ENST00000600310 CFL1P23528 166 aaKnown RBP16.5■□□□□ 0.23
UPF1-209ENST00000600310 ZNF81P51508 661 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 EFNA4P52798 201 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 ACTA2P62736 377 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 ACTG2P63267 376 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 MFGE8Q08431 387 aaPredicted RBP16.5■□□□□ 0.23
UPF1-209ENST00000600310 TP53I3Q53FA7 332 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 C6orf141Q5SZD1 244 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 FAM220AQ7Z4H9 259 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 LHFPL3Q86UP9 236 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 BPIFB6Q8NFQ5 453 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 NEU4Q8WWR8 484 aaPredicted RBP16.5■□□□□ 0.23
UPF1-209ENST00000600310 GTF3AQ92664 365 aaKnown RBP16.5■□□□□ 0.23
UPF1-209ENST00000600310 REEP6Q96HR9 211 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 SIGLEC11Q96RL6 698 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 RHNO1Q9BSD3 238 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 ALG8Q9BVK2 526 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 PBOV1Q9GZY1 135 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 TPK1Q9H3S4 243 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 MOB1AQ9H8S9 216 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 CNOT2Q9NZN8 540 aaKnown RBP16.5■□□□□ 0.23
UPF1-209ENST00000600310 NUFIP1Q9UHK0 495 aaKnown RBP16.5■□□□□ 0.23
UPF1-209ENST00000600310 PSORS1C1Q9UIG5 152 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 OTOGQ6ZRI0 2925 aa16.5■□□□□ 0.23
UPF1-209ENST00000600310 ZSCAN5BA6NJL1 495 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 CD300LBA8K4G0 201 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 RPP14O95059 124 aaKnown RBP16.49■□□□□ 0.23
UPF1-209ENST00000600310 F12P00748 615 aaPredicted RBP16.49■□□□□ 0.23
UPF1-209ENST00000600310 TACSTD2P09758 323 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 PRSS12P56730 875 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 OR12D2P58182 307 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 FAM3AP98173 230 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 ZMAT1Q5H9K5 638 aa16.49■□□□□ 0.23
UPF1-209ENST00000600310 SHEQ5VZ18 495 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms