RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 BHLHE23Q8NDY6 225 aa12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 OR8G5Q8NG78 346 aa12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 CYGBQ8WWM9 190 aa12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 FAM168AQ92567 244 aa12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 RNF166Q96A37 237 aaPredicted RBP12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 SPSB4Q96A44 273 aa12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 RNFT2Q96EX2 444 aa12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 LYZL4Q96KX0 146 aa12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 REG4Q9BYZ8 158 aa12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 GSX1Q9H4S2 264 aaPredicted RBP12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 PPP1R3EQ9H7J1 279 aa12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 FAM206AQ9NX38 181 aa12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 NKIRAS2Q9NYR9 191 aa12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 A0A1B0GWJ7 208 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 CD300LBA8K4G0 201 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 IQCF6A8MYZ5 107 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 ZNF670-ZNF695F2Z2N8 137 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 MLNRO43193 412 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 TBX1O43435 398 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 CDC14BO60729 498 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 RP2O75695 350 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 GNAO1P09471 354 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 MTNR1AP48039 350 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 ISL1P61371 349 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 ZNF91Q05481 1191 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 MFGE8Q08431 387 aaPredicted RBP12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 TMED1Q13445 227 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 RIN1Q13671 783 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 CARTPTQ16568 116 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 MEDAGQ5VYS4 303 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 LAIR2Q6ISS4 152 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 DEGS2Q6QHC5 323 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 CLEC2AQ6UVW9 174 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 PGAP1Q75T13 922 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 ZNF679Q8IYX0 411 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 DHRSXQ8N5I4 330 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 ZNF555Q8NEP9 628 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 OR8B12Q8NGG6 310 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 SNX33Q8WV41 574 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 ASB17Q8WXJ9 295 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 LGALS12Q96DT0 336 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 COX4I2Q96KJ9 171 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 SLC30A2Q9BRI3 323 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 RHNO1Q9BSD3 238 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 DCAF16Q9NXF7 216 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 TREM2Q9NZC2 230 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 GPR160Q9UJ42 338 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 EXOGQ9Y2C4 368 aaKnown RBP12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 TMEM14AQ9Y6G1 99 aa12.06□□□□□ -0.48
SHKBP1-217ENST00000598558 HLA-DPB1P04440 258 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 OR2T7P0C7T2 308 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 PDLIM4P50479 330 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 PSMA6P60900 246 aaKnown RBP12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 FAM3AP98173 230 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 MALLQ13021 153 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 KCTD18Q6PI47 426 aaPredicted RBP12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 MRPL21Q7Z2W9 205 aaKnown RBP12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 OR2Z1Q8NG97 314 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 OR10H4Q8NGA5 316 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 OR2T27Q8NH04 317 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 CNIH3Q8TBE1 160 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 RDH5Q92781 318 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 RFKQ969G6 155 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 REEP6Q96HR9 211 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 PGAM5Q96HS1 289 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 C18orf12Q96KH6 178 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 MNTQ99583 582 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 ZNF649Q9BS31 505 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 ADI1Q9BV57 179 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 C8orf4Q9NR00 106 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 CYSLTR2Q9NS75 346 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 IKZF2Q9UKS7 526 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 MYRFQ9Y2G1 1151 aa12.05□□□□□ -0.48
SHKBP1-217ENST00000598558 IGHV4-61A0A0C4DH41 118 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 IGHV3-64DA0A0J9YX35 117 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 hCG_38984A0A1B0GV85 526 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 LOC390937A0A1W2PQ73 354 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 PLSCR5A0PG75 271 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 WNT9BO14905 357 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 ZNF254O75437 659 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 CD55P08174 381 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 DBTP11182 482 aaKnown RBP12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 SELEP16581 610 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 GIFP27352 417 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 DCTDP32321 178 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 LIPAP38571 399 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 CRYBB2P43320 205 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 NR4A2P43354 598 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 DSCR9P59020 149 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 TNFAIP6P98066 277 aaPredicted RBP12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 IL5RAQ01344 420 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 KRTAP1-1Q07627 177 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 POU4F2Q12837 409 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 PCGF3Q3KNV8 242 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 FAM209AQ5JX71 171 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 TTC23Q5W5X9 447 aa12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 ZNF771Q7L3S4 317 aaPredicted RBP12.04□□□□□ -0.48
SHKBP1-217ENST00000598558 OR10AD1Q8NGE0 317 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms