RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 ACSM1Q08AH1 577 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 ST3GAL3Q11203 375 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 FHL1Q13642 323 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 KCNMB1Q16558 191 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 VMACQ2NL98 169 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 TEX36Q5VZQ5 186 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 NCR3LG1Q68D85 454 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 PGM2L1Q6PCE3 622 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 LIAT1Q6ZQX7 453 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 NRMQ8IXM6 262 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 DPP10Q8N608 796 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 GCSAMQ8N6F7 178 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 OR13C2Q8NGS9 318 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 OR10A6Q8NH74 314 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 Q96M85 177 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 SYT4Q9H2B2 425 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 RERGLQ9H628 205 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 COA3Q9Y2R0 106 aaPredicted RBP8.28□□□□□ -1.08
TRIM28-210ENST00000597618 DYNC2H1Q8NCM8 4307 aaKnown RBP8.28□□□□□ -1.08
TRIM28-210ENST00000597618 hCG_1807616A0A1W2PRN6 198 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 A6NLC8 198 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 ANGPT2O15123 496 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 IFNA14P01570 189 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 ACSM4P0C7M7 580 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 CD33P20138 364 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 OR1E2P47887 323 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 UBE2E1P51965 193 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 HIST1H3AP68431 136 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 PRB3Q04118 309 aaPredicted RBP8.27□□□□□ -1.09
TRIM28-210ENST00000597618 CD69Q07108 199 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 MZT1Q08AG7 82 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 ECH1Q13011 328 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 KLRD1Q13241 179 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 KRR1Q13601 381 aaKnown RBP8.27□□□□□ -1.09
TRIM28-210ENST00000597618 LY6EQ16553 131 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 AANATQ16613 207 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 MICBQ29980 383 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 KRTAP27-1Q3LI81 207 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 HIST2H3PS2Q5TEC6 136 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 CCBE1Q6UXH8 406 aaPredicted RBP8.27□□□□□ -1.09
TRIM28-210ENST00000597618 HIST2H3AQ71DI3 136 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 SLC36A1Q7Z2H8 476 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 MRPL21Q7Z2W9 205 aaKnown RBP8.27□□□□□ -1.09
TRIM28-210ENST00000597618 FAM122BQ7Z309 247 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 Q8N7P7 452 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 OR51G2Q8NGK0 314 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 SLC7A13Q8TCU3 470 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 ACOT11Q8WXI4 607 aaPredicted RBP8.27□□□□□ -1.09
TRIM28-210ENST00000597618 TNFRSF14Q92956 283 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 SLCO4A1Q96BD0 722 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 PRRC1Q96M27 445 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 SSX3Q99909 188 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 CCDC28BQ9BUN5 200 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 RABEP2Q9H5N1 569 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 METTL8Q9H825 291 aaKnown RBP8.27□□□□□ -1.09
TRIM28-210ENST00000597618 MRPL15Q9P015 296 aaKnown RBP8.27□□□□□ -1.09
TRIM28-210ENST00000597618 DNAJB11Q9UBS4 358 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 RPS6KA6Q9UK32 745 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 NDUFAF1Q9Y375 327 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 LHFPL6Q9Y693 200 aa8.27□□□□□ -1.09
TRIM28-210ENST00000597618 SACSQ9NZJ4 4579 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 IGHV3OR15-7A0A075B7D8 119 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.26□□□□□ -1.09
TRIM28-210ENST00000597618 A0A1B0GW55 424 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 CD300LBA8K4G0 201 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 F5H5K5 113 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 NDUFB3O43676 98 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 LHBP01229 141 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 LCATP04180 440 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 DUX4L2P0CJ85 424 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 DUX4L3P0CJ86 424 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 DUX4L4P0CJ87 422 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 DUX4L5P0CJ88 424 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 DUX4L6P0CJ89 424 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 DUX4L7P0CJ90 424 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 CD28P10747 220 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 IGLL1P15814 213 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 MUC1P15941 1255 aaPredicted RBP8.26□□□□□ -1.09
TRIM28-210ENST00000597618 SDHAP31040 664 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 IDH3AP50213 366 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 SLC18A1P54219 525 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 PRKCDQ05655 676 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 POU4F2Q12837 409 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 TRAP1Q12931 704 aaKnown RBP8.26□□□□□ -1.09
TRIM28-210ENST00000597618 NFYCQ13952 458 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 RSPO1Q2MKA7 263 aaPredicted RBP8.26□□□□□ -1.09
TRIM28-210ENST00000597618 LRRC75BQ2VPJ9 315 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 DEFB121Q5J5C9 76 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 ZBTB37Q5TC79 503 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 PGBD2Q6P3X8 592 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 CRIP3Q6Q6R5 217 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 CORO6Q6QEF8 472 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 DUX4L9Q6RFH8 374 aaPredicted RBP8.26□□□□□ -1.09
TRIM28-210ENST00000597618 ZNF826PQ6ZT77 177 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.26□□□□□ -1.09
TRIM28-210ENST00000597618 CROCCP2Q86T23 111 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 ADCK1Q86TW2 530 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 FGFRL1Q8N441 504 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 PNKDQ8N490 385 aa8.26□□□□□ -1.09
TRIM28-210ENST00000597618 PAPD5Q8NDF8 572 aaKnown RBP8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms