RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	RNF2	Q99496	336 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	SDHC	Q99643	169 aa	Predicted RBP	3.98	□□□□□ -1.77
SS18-223	ENST00000583595	RAB34	Q9BZG1	259 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF436	Q9C0F3	470 aa	Predicted RBP	3.98	□□□□□ -1.77
SS18-223	ENST00000583595	CCNB1IP1	Q9NPC3	277 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	NIT2	Q9NQR4	276 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	PLCXD1	Q9NUJ7	323 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	MYEF2	Q9P2K5	600 aa	Known RBP	3.98	□□□□□ -1.77
SS18-223	ENST00000583595	DCDC2	Q9UHG0	476 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	RARRES3	Q9UL19	164 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	TPRKB	Q9Y3C4	175 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	SAMHD1	Q9Y3Z3	626 aa	Known RBP	3.98	□□□□□ -1.77
SS18-223	ENST00000583595	LAMB4	A4D0S4	1761 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	KDM3B	Q7LBC6	1761 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	MON2	Q7Z3U7	1717 aa		3.98	□□□□□ -1.77
SS18-223	ENST00000583595	NHS	Q6T4R5	1651 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	CROCC	Q5TZA2	2017 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	COL18A1	P39060	1754 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	LOC100506127	A0A0U1RQW1	187 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595		A0A1B0GUV1	79 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595		A0A1B0GV90	55 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595		A0A1B0GW55	424 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	SULT1C2	O00338	296 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	OR10H3	O60404	316 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	PLIN3	O60664	434 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	RAD1	O60671	282 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	HCN1	O60741	890 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	POP7	O75817	140 aa	Known RBP	3.97	□□□□□ -1.77
SS18-223	ENST00000583595	PIAS1	O75925	651 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	DUS4L	O95620	317 aa	Known RBP	3.97	□□□□□ -1.77
SS18-223	ENST00000583595	LALBA	P00709	142 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	IFNA10	P01566	189 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	IGHG1	P01857	330 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	RLN2	P04090	185 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	KLK3	P07288	261 aa	Predicted RBP	3.97	□□□□□ -1.77
SS18-223	ENST00000583595	ANXA5	P08758	320 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	PATE4	P0C8F1	98 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	ZSCAN5DP	P0CG00	497 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	DUX4L2	P0CJ85	424 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	DUX4L3	P0CJ86	424 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	DUX4L4	P0CJ87	422 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	DUX4L5	P0CJ88	424 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	DUX4L6	P0CJ89	424 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	DUX4L7	P0CJ90	424 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	STAG3L2	P0CL84	134 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	ABO	P16442	354 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	GNB3	P16520	340 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	CD36	P16671	472 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	SERPINA2	P20848	420 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	PTN	P21246	168 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	IDS	P22304	550 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	PSMB9	P28065	219 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	SPR	P35270	261 aa	Predicted RBP	3.97	□□□□□ -1.77
SS18-223	ENST00000583595	RFC3	P40938	356 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	MAP3K8	P41279	467 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	CXCR4	P61073	352 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	RRAS2	P62070	204 aa	Predicted RBP	3.97	□□□□□ -1.77
SS18-223	ENST00000583595	LSM3	P62310	102 aa	Known RBP	3.97	□□□□□ -1.77
SS18-223	ENST00000583595	ERVK-25	P63136	954 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	EMX1	Q04741	257 aa	Predicted RBP	3.97	□□□□□ -1.77
SS18-223	ENST00000583595	TFDP2	Q14188	446 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	SMCO1	Q147U7	214 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	GLYR1	Q49A26	553 aa	Predicted RBP	3.97	□□□□□ -1.77
SS18-223	ENST00000583595	OR2B11	Q5JQS5	317 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	MARCH8	Q5T0T0	291 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	ADAMTSL4-AS1	Q5T5F5	129 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF324B	Q6AW86	544 aa	Predicted RBP	3.97	□□□□□ -1.77
SS18-223	ENST00000583595	PVRIG	Q6DKI7	326 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	ERICH5	Q6P6B1	374 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	RTL4	Q6ZR62	310 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	ZCCHC23	Q6ZST2	131 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	RASSF6	Q6ZTQ3	369 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	SLC47A2	Q86VL8	602 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	MTURN	Q8N3F0	131 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	STPG2	Q8N412	459 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	C12orf45	Q8N5I9	185 aa	Predicted RBP	3.97	□□□□□ -1.77
SS18-223	ENST00000583595	ATPAF2	Q8N5M1	289 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	CLHC1	Q8NHS4	586 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	IL1F10	Q8WWZ1	152 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	DNAJC19	Q96DA6	116 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	PFDN5	Q99471	154 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	P2RY13	Q9BPV8	354 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	MCRIP2	Q9BUT9	160 aa	Known RBP	3.97	□□□□□ -1.77
SS18-223	ENST00000583595	UGT2B28	Q9BY64	529 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	PRRG3	Q9BZD7	231 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	CCDC90B	Q9GZT6	254 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	SYNDIG1	Q9H7V2	258 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	HEXA-AS1	Q9H8Q6	139 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	DYRK4	Q9NR20	520 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	PXMP2	Q9NR77	195 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	IMP3	Q9NV31	184 aa	Known RBP	3.97	□□□□□ -1.77
SS18-223	ENST00000583595	SCN3B	Q9NY72	215 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	TREM2	Q9NZC2	230 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	MED11	Q9P086	117 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	DUX4	Q9UBX2	424 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	STAP1	Q9ULZ2	295 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	PROCR	Q9UNN8	238 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	GAB2	Q9UQC2	676 aa		3.97	□□□□□ -1.77
SS18-223	ENST00000583595	MRPS28	Q9Y2Q9	187 aa	Known RBP	3.97	□□□□□ -1.77
SS18-223	ENST00000583595	RGPD5	Q99666	1765 aa		3.97	□□□□□ -1.77

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