RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 APOBEC3DQ96AK3 386 aaPredicted RBP12.8□□□□□ -0.36
VPS53-218ENST00000575207 HCAR1Q9BXC0 346 aa12.8□□□□□ -0.36
VPS53-218ENST00000575207 HEXA-AS1Q9H8Q6 139 aa12.8□□□□□ -0.36
VPS53-218ENST00000575207 WDR76Q9H967 626 aa12.8□□□□□ -0.36
VPS53-218ENST00000575207 ZDHHC18Q9NUE0 388 aa12.8□□□□□ -0.36
VPS53-218ENST00000575207 A0A1W2PPL8 197 aa12.79□□□□□ -0.36
VPS53-218ENST00000575207 hCG_1807616A0A1W2PRN6 198 aa12.79□□□□□ -0.36
VPS53-218ENST00000575207 ACOT8O14734 319 aa12.79□□□□□ -0.36
VPS53-218ENST00000575207 ASAH2BP0C7U1 165 aa12.79□□□□□ -0.36
VPS53-218ENST00000575207 UMPSP11172 480 aa12.79□□□□□ -0.36
VPS53-218ENST00000575207 BGNP21810 368 aa12.79□□□□□ -0.36
VPS53-218ENST00000575207 PRKAR1BP31321 381 aa12.79□□□□□ -0.36
VPS53-218ENST00000575207 PRSS12P56730 875 aa12.79□□□□□ -0.36
VPS53-218ENST00000575207 ZNF260Q3ZCT1 412 aa12.79□□□□□ -0.36
VPS53-218ENST00000575207 ARMC4Q5T2S8 1044 aa12.79□□□□□ -0.36
VPS53-218ENST00000575207 ATPAF1Q5TC12 328 aaPredicted RBP12.79□□□□□ -0.36
VPS53-218ENST00000575207 ZNF826PQ6ZT77 177 aa12.79□□□□□ -0.36
VPS53-218ENST00000575207 GCAP28676 217 aa12.78□□□□□ -0.36
VPS53-218ENST00000575207 S100A3P33764 101 aa12.78□□□□□ -0.36
VPS53-218ENST00000575207 SERPINB5P36952 375 aa12.78□□□□□ -0.36
VPS53-218ENST00000575207 RPL18Q07020 188 aaKnown RBP12.78□□□□□ -0.36
VPS53-218ENST00000575207 C10orf107Q8IVU9 208 aa12.78□□□□□ -0.36
VPS53-218ENST00000575207 ZNF695Q8IW36 515 aa12.78□□□□□ -0.36
VPS53-218ENST00000575207 MKXQ8IYA7 352 aa12.78□□□□□ -0.36
VPS53-218ENST00000575207 FOXRED1Q96CU9 486 aaPredicted RBP12.78□□□□□ -0.36
VPS53-218ENST00000575207 MALSU1Q96EH3 234 aa12.78□□□□□ -0.36
VPS53-218ENST00000575207 BCL2L10Q9HD36 194 aa12.78□□□□□ -0.36
VPS53-218ENST00000575207 NDUFAF1Q9Y375 327 aa12.78□□□□□ -0.36
VPS53-218ENST00000575207 NOP16Q9Y3C1 178 aaKnown RBP12.78□□□□□ -0.36
VPS53-218ENST00000575207 A0A087WUV0 522 aaPredicted RBP12.77□□□□□ -0.37
VPS53-218ENST00000575207 PSMB11A5LHX3 300 aa12.77□□□□□ -0.37
VPS53-218ENST00000575207 A6NLC8 198 aa12.77□□□□□ -0.37
VPS53-218ENST00000575207 FAM90A22PA8MWA6 464 aa12.77□□□□□ -0.37
VPS53-218ENST00000575207 E9PBE3 544 aa12.77□□□□□ -0.37
VPS53-218ENST00000575207 RHBDL1O75783 438 aa12.77□□□□□ -0.37
VPS53-218ENST00000575207 DBHP09172 617 aa12.77□□□□□ -0.37
VPS53-218ENST00000575207 SELLP14151 372 aa12.77□□□□□ -0.37
VPS53-218ENST00000575207 CNTFRP26992 372 aa12.77□□□□□ -0.37
VPS53-218ENST00000575207 GGT2P36268 569 aa12.77□□□□□ -0.37
VPS53-218ENST00000575207 RGS8P57771 180 aaPredicted RBP12.77□□□□□ -0.37
VPS53-218ENST00000575207 PCK2Q16822 640 aa12.77□□□□□ -0.37
VPS53-218ENST00000575207 FAM27D1Q5T7N8 215 aa12.77□□□□□ -0.37
VPS53-218ENST00000575207 C16orf89Q6UX73 402 aa12.77□□□□□ -0.37
VPS53-218ENST00000575207 LINC00114Q6XXX2 140 aa12.77□□□□□ -0.37
VPS53-218ENST00000575207 C16orf82Q7Z2V1 217 aa12.77□□□□□ -0.37
VPS53-218ENST00000575207 SPATA4Q8NEY3 305 aa12.77□□□□□ -0.37
VPS53-218ENST00000575207 OR9Q1Q8NGQ5 310 aa12.77□□□□□ -0.37
VPS53-218ENST00000575207 C12orf43Q96C57 262 aaKnown RBP12.77□□□□□ -0.37
VPS53-218ENST00000575207 RBP7Q96R05 134 aa12.77□□□□□ -0.37
VPS53-218ENST00000575207 SLC22A4Q9H015 551 aa12.77□□□□□ -0.37
VPS53-218ENST00000575207 EMC7Q9NPA0 242 aa12.77□□□□□ -0.37
VPS53-218ENST00000575207 INIPQ9NRY2 104 aa12.77□□□□□ -0.37
VPS53-218ENST00000575207 OR6C6A6NF89 314 aa12.76□□□□□ -0.37
VPS53-218ENST00000575207 TRIM64CA6NLI5 447 aa12.76□□□□□ -0.37
VPS53-218ENST00000575207 A8MZ25 164 aa12.76□□□□□ -0.37
VPS53-218ENST00000575207 SCG5P05408 212 aa12.76□□□□□ -0.37
VPS53-218ENST00000575207 CA6P23280 308 aa12.76□□□□□ -0.37
VPS53-218ENST00000575207 CLNS1AP54105 237 aaKnown RBP12.76□□□□□ -0.37
VPS53-218ENST00000575207 BBS10Q8TAM1 723 aa12.76□□□□□ -0.37
VPS53-218ENST00000575207 RNFT2Q96EX2 444 aa12.76□□□□□ -0.37
VPS53-218ENST00000575207 ADAT1Q9BUB4 502 aaKnown RBP12.76□□□□□ -0.37
VPS53-218ENST00000575207 POLE4Q9NR33 117 aa12.76□□□□□ -0.37
VPS53-218ENST00000575207 THUMPD1Q9NXG2 353 aaKnown RBP12.76□□□□□ -0.37
VPS53-218ENST00000575207 SLC13A4Q9UKG4 626 aa12.76□□□□□ -0.37
VPS53-218ENST00000575207 ANGPT4Q9Y264 503 aa12.76□□□□□ -0.37
VPS53-218ENST00000575207 DNAH6Q9C0G6 4158 aa12.75□□□□□ -0.37
VPS53-218ENST00000575207 H3BUI4 141 aa12.75□□□□□ -0.37
VPS53-218ENST00000575207 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.75□□□□□ -0.37
VPS53-218ENST00000575207 KPNA4O00629 521 aaPredicted RBP12.75□□□□□ -0.37
VPS53-218ENST00000575207 POLR3GO15318 223 aaPredicted RBP12.75□□□□□ -0.37
VPS53-218ENST00000575207 GMDSO60547 372 aa12.75□□□□□ -0.37
VPS53-218ENST00000575207 TPST2O60704 377 aa12.75□□□□□ -0.37
VPS53-218ENST00000575207 TRIM13O60858 407 aa12.75□□□□□ -0.37
VPS53-218ENST00000575207 GRPP07492 148 aa12.75□□□□□ -0.37
VPS53-218ENST00000575207 POU1F1P28069 291 aa12.75□□□□□ -0.37
VPS53-218ENST00000575207 WDR4P57081 412 aaKnown RBP12.75□□□□□ -0.37
VPS53-218ENST00000575207 KRT72Q14CN4 511 aa12.75□□□□□ -0.37
VPS53-218ENST00000575207 SSX2Q16385 188 aa12.75□□□□□ -0.37
VPS53-218ENST00000575207 ABCA11PQ4W5N1 156 aa12.75□□□□□ -0.37
VPS53-218ENST00000575207 DHRS4L2Q6PKH6 230 aa12.75□□□□□ -0.37
VPS53-218ENST00000575207 ZNF329Q86UD4 541 aa12.75□□□□□ -0.37
VPS53-218ENST00000575207 CNPY4Q8N129 248 aa12.75□□□□□ -0.37
VPS53-218ENST00000575207 OR1F12Q8NHA8 337 aa12.75□□□□□ -0.37
VPS53-218ENST00000575207 OR5K1Q8NHB7 308 aa12.75□□□□□ -0.37
VPS53-218ENST00000575207 ALG12Q9BV10 488 aa12.75□□□□□ -0.37
VPS53-218ENST00000575207 C19orf73Q9NVV2 129 aa12.75□□□□□ -0.37
VPS53-218ENST00000575207 TBL2Q9Y4P3 447 aaKnown RBP12.75□□□□□ -0.37
VPS53-218ENST00000575207 DNAH17Q9UFH2 4485 aa12.75□□□□□ -0.37
VPS53-218ENST00000575207 CHP2O43745 196 aa12.74□□□□□ -0.37
VPS53-218ENST00000575207 TPST1O60507 370 aa12.74□□□□□ -0.37
VPS53-218ENST00000575207 DEDDO75618 318 aa12.74□□□□□ -0.37
VPS53-218ENST00000575207 ETS2P15036 469 aa12.74□□□□□ -0.37
VPS53-218ENST00000575207 CAV3P56539 151 aa12.74□□□□□ -0.37
VPS53-218ENST00000575207 GK2Q14410 553 aaPredicted RBP12.74□□□□□ -0.37
VPS53-218ENST00000575207 LDLRAD2Q5SZI1 272 aa12.74□□□□□ -0.37
VPS53-218ENST00000575207 TTC33Q6PID6 262 aaPredicted RBP12.74□□□□□ -0.37
VPS53-218ENST00000575207 OR8U1Q8NH10 309 aa12.74□□□□□ -0.37
VPS53-218ENST00000575207 FNDC8Q8TC99 324 aa12.74□□□□□ -0.37
VPS53-218ENST00000575207 TCP10LQ8TDR4 215 aa12.74□□□□□ -0.37
VPS53-218ENST00000575207 LRRC8CQ8TDW0 803 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms