RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 LPAR2Q9HBW0 351 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 CENPMQ9NSP4 180 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 DDX28Q9NUL7 540 aaKnown RBP6.87□□□□□ -1.31
VPS53-214ENST00000572607 TREM2Q9NZC2 230 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 IL19Q9UHD0 177 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 NOP16Q9Y3C1 178 aaKnown RBP6.87□□□□□ -1.31
VPS53-214ENST00000572607 WIPI2Q9Y4P8 454 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 COMMD3-BMI1R4GMX3 469 aa6.87□□□□□ -1.31
VPS53-214ENST00000572607 FAM183AA6NL82 134 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 LRRC30A6NM36 301 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 IQCF6A8MYZ5 107 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 IFNL4K9M1U5 179 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 ZNF593O00488 134 aaPredicted RBP6.86□□□□□ -1.31
VPS53-214ENST00000572607 TIPRLO75663 272 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 GLCEO94923 617 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 MSMBP08118 114 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 FCGR1AP12314 374 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 IRF2P14316 349 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 FASP25445 335 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 GSTT1P30711 240 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 RPS27P42677 84 aaKnown RBP6.86□□□□□ -1.31
VPS53-214ENST00000572607 RPS7P62081 194 aaKnown RBP6.86□□□□□ -1.31
VPS53-214ENST00000572607 GRB2P62993 217 aaKnown RBP6.86□□□□□ -1.31
VPS53-214ENST00000572607 DBPQ10586 325 aaPredicted RBP6.86□□□□□ -1.31
VPS53-214ENST00000572607 SCGB2A2Q13296 93 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 EIF2B1Q14232 305 aaKnown RBP6.86□□□□□ -1.31
VPS53-214ENST00000572607 HLXQ14774 488 aaPredicted RBP6.86□□□□□ -1.31
VPS53-214ENST00000572607 KLHL12Q53G59 568 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 TMEM255AQ5JRV8 349 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 TEX30Q5JUR7 227 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 ZNF362Q5T0B9 420 aaPredicted RBP6.86□□□□□ -1.31
VPS53-214ENST00000572607 ACSM5Q6NUN0 579 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 DRAM2Q6UX65 266 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 SHFQ7M4L6 423 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 TMEM179BQ7Z7N9 219 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 ERI1Q8IV48 349 aaKnown RBP6.86□□□□□ -1.31
VPS53-214ENST00000572607 SPICQ8N5J4 248 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 ZNF283Q8N7M2 679 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 BHLHE23Q8NDY6 225 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 OR6N2Q8NGY6 317 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 TMEM186Q96B77 213 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 SLCO4A1Q96BD0 722 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 C1orf159Q96HA4 380 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 MAP6Q96JE9 813 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 OR2V2Q96R30 315 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 KCNJ15Q99712 375 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 SOX7Q9BT81 388 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 NMNAT2Q9BZQ4 307 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 SLC22A4Q9H015 551 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 WDR76Q9H967 626 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 PNRC2Q9NPJ4 139 aaKnown RBP6.86□□□□□ -1.31
VPS53-214ENST00000572607 PAPOLBQ9NRJ5 636 aaKnown RBP6.86□□□□□ -1.31
VPS53-214ENST00000572607 TMEM106BQ9NUM4 274 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 TMEM100Q9NV29 134 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 UBAP1Q9NZ09 502 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 ENOPH1Q9UHY7 261 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 TMEFF2Q9UIK5 374 aaPredicted RBP6.86□□□□□ -1.31
VPS53-214ENST00000572607 PCDHB10Q9UN67 800 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 PPP1R3CQ9UQK1 317 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 N6AMT1Q9Y5N5 214 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 NPTNQ9Y639 398 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 CACNG2Q9Y698 323 aa6.86□□□□□ -1.31
VPS53-214ENST00000572607 TRAV20A0A0B4J274 112 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 GGT3PA6NGU5 568 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 FAM157AC9JC47 383 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 PRODHO43272 600 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 TBX1O43435 398 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 XRCC2O43543 280 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 ANXA2P07355 339 aaKnown RBP6.85□□□□□ -1.31
VPS53-214ENST00000572607 CLUP10909 449 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 PRKACGP22612 351 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 PRKXP51817 358 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 MZT1Q08AG7 82 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 GK2Q14410 553 aaPredicted RBP6.85□□□□□ -1.31
VPS53-214ENST00000572607 ATP6AP1Q15904 470 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 C11orf91Q3C1V1 193 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 KRTAP27-1Q3LI81 207 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 SLC35D3Q5M8T2 416 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 LCN1P1Q5VSP4 162 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 PLBD1Q6P4A8 553 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 Q6ZR03 302 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 COLCA1Q6ZS62 124 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 IL17RELQ6ZVW7 336 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 SPATC1Q76KD6 591 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 HIST2H2ABQ8IUE6 130 aaPredicted RBP6.85□□□□□ -1.31
VPS53-214ENST00000572607 ZDHHC13Q8IUH4 622 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 HS3ST5Q8IZT8 346 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 C1orf87Q8N0U7 546 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 MUC20Q8N307 709 aaPredicted RBP6.85□□□□□ -1.31
VPS53-214ENST00000572607 KLHL36Q8N4N3 616 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 OR10AD1Q8NGE0 317 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 OR11L1Q8NGX0 322 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 OR5K1Q8NHB7 308 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 ITLN1Q8WWA0 313 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 ZNRF4Q8WWF5 429 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 SLC30A2Q9BRI3 323 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 OPA3Q9H6K4 179 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 MED20Q9H944 212 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 SLC25A19Q9HC21 320 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 KRT84Q9NSB2 600 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms