RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 CCSO14618 274 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 SCGNO76038 276 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 DKK1O94907 266 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 SLC25A4P12235 298 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 PNLIPP16233 465 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 ABOP16442 354 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 HOXD11P31277 338 aaPredicted RBP20.17■□□□□ 0.82
VPS53-211ENST00000571805 HRH1P35367 487 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 AWAT2Q6E213 333 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 OVCH2Q7RTZ1 564 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 OR5AS1Q8N127 324 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 SREK1IP1Q8N9Q2 155 aaPredicted RBP20.17■□□□□ 0.82
VPS53-211ENST00000571805 ZNF319Q9P2F9 582 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 TNFSF18Q9UNG2 199 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 SESN1Q9Y6P5 492 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 LY6G6EA0A0G2JKS1 128 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 C9orf170A2RU37 121 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 STK17BO94768 372 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 ERCC1P07992 297 aaPredicted RBP20.17■□□□□ 0.82
VPS53-211ENST00000571805 NUP62P37198 522 aaPredicted RBP20.17■□□□□ 0.82
VPS53-211ENST00000571805 PRKXP51817 358 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 PTCRAQ6ISU1 281 aaPredicted RBP20.17■□□□□ 0.82
VPS53-211ENST00000571805 KCNRGQ8N5I3 272 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 OR6X1Q8NH79 312 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 MITD1Q8WV92 249 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 C1orf147Q96MC9 270 aaPredicted RBP20.17■□□□□ 0.82
VPS53-211ENST00000571805 SPACA5Q96QH8 159 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 OR5B2Q96R09 309 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 NICN1Q9BSH3 213 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 U3KQA8 63 aa20.17■□□□□ 0.82
VPS53-211ENST00000571805 IGHV5-10-1A0A0J9YXX1 117 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 OR2AT4A6NND4 320 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 RAMP1O60894 148 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 HPP00738 406 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 ZNF20P17024 532 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 CCL7P80098 99 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 HIST3H3Q16695 136 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 CARD17Q5XLA6 110 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 LIN54Q6MZP7 749 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 C11orf87Q6NUJ2 197 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 OR8B12Q8NGG6 310 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 ST8SIA4Q92187 359 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 SEC22AQ96IW7 307 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 CRB3Q9BUF7 120 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 LPAR5Q9H1C0 372 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 WDR13Q9H1Z4 485 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 PPA2Q9H2U2 334 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 PNRC2Q9NPJ4 139 aaKnown RBP20.16■□□□□ 0.82
VPS53-211ENST00000571805 PLEKHA6Q9Y2H5 1048 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 POLR1DQ9Y2S0 133 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 CACNA1EQ15878 2313 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 A0A0A6YYD4 124 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 K7ESF4 209 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 SLC2A1P11166 492 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 ZNF17P17021 662 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 CASRP41180 1078 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 GABREP78334 506 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 JMJD6Q6NYC1 403 aaPredicted RBP20.16■□□□□ 0.82
VPS53-211ENST00000571805 TMEM81Q6P7N7 255 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 HSD17B13Q7Z5P4 300 aaPredicted RBP20.16■□□□□ 0.82
VPS53-211ENST00000571805 BVESQ8NE79 360 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 ST8SIA2Q92186 375 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 IFT46Q9NQC8 304 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 ASH2LQ9UBL3 628 aa20.16■□□□□ 0.82
VPS53-211ENST00000571805 TEX46H3BTG2 121 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 LGALS8O00214 317 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 KLK2P20151 261 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 ZNF121P58317 390 aaPredicted RBP20.15■□□□□ 0.82
VPS53-211ENST00000571805 KCNMB1Q16558 191 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 ZNF239Q16600 458 aaKnown RBP20.15■□□□□ 0.82
VPS53-211ENST00000571805 WDSUB1Q8N9V3 476 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 OXGR1Q96P68 337 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 RASL10BQ96S79 203 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 SHARPINQ9H0F6 387 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 FN3KRPQ9HA64 309 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 WDR87Q6ZQQ6 2873 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 KRBOX1C9JBD0 128 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 RER1O15258 196 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 EFSO43281 561 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 UBBP0CG47 229 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 RPS27AP62979 156 aaKnown RBP20.15■□□□□ 0.82
VPS53-211ENST00000571805 UBA52P62987 128 aaKnown RBP20.15■□□□□ 0.82
VPS53-211ENST00000571805 ZNF345Q14585 488 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 TAF13Q15543 124 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 FAHD2BQ6P2I3 314 aaPredicted RBP20.15■□□□□ 0.82
VPS53-211ENST00000571805 GLIPR1L1Q6UWM5 242 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 ABHD12BQ7Z5M8 362 aaPredicted RBP20.15■□□□□ 0.82
VPS53-211ENST00000571805 EIF4E3Q8N5X7 224 aaKnown RBP20.15■□□□□ 0.82
VPS53-211ENST00000571805 ADAD2Q8NCV1 583 aaKnown RBP20.15■□□□□ 0.82
VPS53-211ENST00000571805 TMEM104Q8NE00 496 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 OR2I1PQ8NGU4 316 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 SLC22A8Q8TCC7 542 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 FAHD2AQ96GK7 314 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 PDCD10Q9BUL8 212 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 WNT16Q9UBV4 365 aa20.15■□□□□ 0.82
VPS53-211ENST00000571805 CHRM2P08172 466 aa20.14■□□□□ 0.82
VPS53-211ENST00000571805 IL13RA1P78552 427 aa20.14■□□□□ 0.82
VPS53-211ENST00000571805 OR2W3Q7Z3T1 314 aa20.14■□□□□ 0.82
VPS53-211ENST00000571805 ZNF101Q8IZC7 436 aa20.14■□□□□ 0.82
VPS53-211ENST00000571805 FADS6Q8N9I5 356 aa20.14■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms