RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 AMELYQ99218 206 aa17.66■□□□□ 0.42
VPS53-210ENST00000571456 JAM3Q9BX67 310 aa17.66■□□□□ 0.42
VPS53-210ENST00000571456 MS4A5Q9H3V2 200 aa17.66■□□□□ 0.42
VPS53-210ENST00000571456 RGCCQ9H4X1 137 aa17.66■□□□□ 0.42
VPS53-210ENST00000571456 Q9H521 79 aa17.66■□□□□ 0.42
VPS53-210ENST00000571456 MOB1AQ9H8S9 216 aa17.66■□□□□ 0.42
VPS53-210ENST00000571456 CYSLTR2Q9NS75 346 aa17.66■□□□□ 0.42
VPS53-210ENST00000571456 PLCXD1Q9NUJ7 323 aa17.66■□□□□ 0.42
VPS53-210ENST00000571456 ANK3Q12955 4377 aaKnown RBP17.65■□□□□ 0.42
VPS53-210ENST00000571456 H7C417 338 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 J3QRE1 110 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 OVOL3O00110 214 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 XRCC2O43543 280 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 NGFP01138 241 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 KRT8P05787 483 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 ERCC1P07992 297 aaPredicted RBP17.65■□□□□ 0.42
VPS53-210ENST00000571456 GNAO1P09471 354 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 TACSTD2P09758 323 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 SELEP16581 610 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 CX3CR1P49238 355 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 PPOXP50336 477 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 ACTA2P62736 377 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 ACTG2P63267 376 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 CDK5R2Q13319 367 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 MED21Q13503 144 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 KLF14Q8TD94 323 aaPredicted RBP17.65■□□□□ 0.42
VPS53-210ENST00000571456 TMEM158Q8WZ71 300 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 LGALS12Q96DT0 336 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 ZNF184Q99676 751 aaPredicted RBP17.65■□□□□ 0.42
VPS53-210ENST00000571456 OR2J1Q9GZK6 312 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 IKZF2Q9UKS7 526 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 KLHDC2Q9Y2U9 406 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 LRP12Q9Y561 859 aa17.65■□□□□ 0.42
VPS53-210ENST00000571456 TRIM64A6NGJ6 449 aa17.64■□□□□ 0.41
VPS53-210ENST00000571456 TRIM64BA6NI03 449 aa17.64■□□□□ 0.41
VPS53-210ENST00000571456 M0R233 179 aa17.64■□□□□ 0.41
VPS53-210ENST00000571456 CD8AP01732 235 aa17.64■□□□□ 0.41
VPS53-210ENST00000571456 PIPP12273 146 aaPredicted RBP17.64■□□□□ 0.41
VPS53-210ENST00000571456 MYF6P23409 242 aa17.64■□□□□ 0.41
VPS53-210ENST00000571456 DCKP27707 260 aa17.64■□□□□ 0.41
VPS53-210ENST00000571456 MMP16P51512 607 aa17.64■□□□□ 0.41
VPS53-210ENST00000571456 PRKXP51817 358 aa17.64■□□□□ 0.41
VPS53-210ENST00000571456 C6orf52Q5T4I8 152 aa17.64■□□□□ 0.41
VPS53-210ENST00000571456 LRRN1Q6UXK5 716 aa17.64■□□□□ 0.41
VPS53-210ENST00000571456 FAM220AQ7Z4H9 259 aa17.64■□□□□ 0.41
VPS53-210ENST00000571456 CNIH3Q8TBE1 160 aa17.64■□□□□ 0.41
VPS53-210ENST00000571456 SNX33Q8WV41 574 aa17.64■□□□□ 0.41
VPS53-210ENST00000571456 MRPL37Q9BZE1 423 aaKnown RBP17.64■□□□□ 0.41
VPS53-210ENST00000571456 OR51B6Q9H340 312 aa17.64■□□□□ 0.41
VPS53-210ENST00000571456 FGF20Q9NP95 211 aaPredicted RBP17.64■□□□□ 0.41
VPS53-210ENST00000571456 ZNF701Q9NV72 531 aaPredicted RBP17.64■□□□□ 0.41
VPS53-210ENST00000571456 CNOT2Q9NZN8 540 aaKnown RBP17.64■□□□□ 0.41
VPS53-210ENST00000571456 COPS3Q9UNS2 423 aa17.64■□□□□ 0.41
VPS53-210ENST00000571456 STARD10Q9Y365 291 aa17.64■□□□□ 0.41
VPS53-210ENST00000571456 A0A1W2PQL4 384 aaPredicted RBP17.63■□□□□ 0.41
VPS53-210ENST00000571456 DAPL1A0PJW8 107 aa17.63■□□□□ 0.41
VPS53-210ENST00000571456 EFCAB10A6NFE3 127 aa17.63■□□□□ 0.41
VPS53-210ENST00000571456 IGHA1P01876 353 aa17.63■□□□□ 0.41
VPS53-210ENST00000571456 KITLGP21583 273 aa17.63■□□□□ 0.41
VPS53-210ENST00000571456 HCCSP53701 268 aa17.63■□□□□ 0.41
VPS53-210ENST00000571456 MRPL28Q13084 256 aaKnown RBP17.63■□□□□ 0.41
VPS53-210ENST00000571456 MST1LQ2TV78 715 aa17.63■□□□□ 0.41
VPS53-210ENST00000571456 SPATC1Q76KD6 591 aa17.63■□□□□ 0.41
VPS53-210ENST00000571456 HAVCR1Q96D42 359 aa17.63■□□□□ 0.41
VPS53-210ENST00000571456 GSX2Q9BZM3 304 aa17.63■□□□□ 0.41
VPS53-210ENST00000571456 OR10A2Q9H208 303 aa17.63■□□□□ 0.41
VPS53-210ENST00000571456 BARX1Q9HBU1 254 aaPredicted RBP17.63■□□□□ 0.41
VPS53-210ENST00000571456 AASSQ9UDR5 926 aa17.63■□□□□ 0.41
VPS53-210ENST00000571456 DUSP13Q9UII6 198 aa17.63■□□□□ 0.41
VPS53-210ENST00000571456 ANK2Q01484 3957 aa17.62■□□□□ 0.41
VPS53-210ENST00000571456 ABCA1O95477 2261 aa17.62■□□□□ 0.41
VPS53-210ENST00000571456 A0A1W2PPW3 197 aa17.62■□□□□ 0.41
VPS53-210ENST00000571456 PLSCR5A0PG75 271 aa17.62■□□□□ 0.41
VPS53-210ENST00000571456 METTL15A6NJ78 407 aa17.62■□□□□ 0.41
VPS53-210ENST00000571456 F12P00748 615 aaPredicted RBP17.62■□□□□ 0.41
VPS53-210ENST00000571456 ANXA2P07355 339 aaKnown RBP17.62■□□□□ 0.41
VPS53-210ENST00000571456 FAM209AQ5JX71 171 aa17.62■□□□□ 0.41
VPS53-210ENST00000571456 SYS1Q8N2H4 156 aa17.62■□□□□ 0.41
VPS53-210ENST00000571456 DIRC2Q96SL1 478 aa17.62■□□□□ 0.41
VPS53-210ENST00000571456 DYNLRB1Q9NP97 96 aa17.62■□□□□ 0.41
VPS53-210ENST00000571456 TMEM269A0A1B0GVZ9 245 aa17.61■□□□□ 0.41
VPS53-210ENST00000571456 TMEM129A0AVI4 362 aa17.61■□□□□ 0.41
VPS53-210ENST00000571456 RPSAP08865 295 aaKnown RBP17.61■□□□□ 0.41
VPS53-210ENST00000571456 DDOSTP39656 456 aa17.61■□□□□ 0.41
VPS53-210ENST00000571456 ZNF121P58317 390 aaPredicted RBP17.61■□□□□ 0.41
VPS53-210ENST00000571456 ERVS71-1P61550 626 aa17.61■□□□□ 0.41
VPS53-210ENST00000571456 NKPD1Q17RQ9 610 aa17.61■□□□□ 0.41
VPS53-210ENST00000571456 CDONQ4KMG0 1287 aa17.61■□□□□ 0.41
VPS53-210ENST00000571456 ZNF684Q5T5D7 378 aa17.61■□□□□ 0.41
VPS53-210ENST00000571456 PGAP1Q75T13 922 aa17.61■□□□□ 0.41
VPS53-210ENST00000571456 PRSS45Q7RTY3 260 aa17.61■□□□□ 0.41
VPS53-210ENST00000571456 SPSB4Q96A44 273 aa17.61■□□□□ 0.41
VPS53-210ENST00000571456 CACNG6Q9BXT2 260 aa17.61■□□□□ 0.41
VPS53-210ENST00000571456 RAB1BQ9H0U4 201 aa17.61■□□□□ 0.41
VPS53-210ENST00000571456 AMBNQ9NP70 447 aa17.61■□□□□ 0.41
VPS53-210ENST00000571456 SCN3BQ9NY72 215 aa17.61■□□□□ 0.41
VPS53-210ENST00000571456 DIMT1Q9UNQ2 313 aaKnown RBP17.61■□□□□ 0.41
VPS53-210ENST00000571456 NOP16Q9Y3C1 178 aaKnown RBP17.61■□□□□ 0.41
VPS53-210ENST00000571456 USF3Q68DE3 2245 aa17.61■□□□□ 0.41
VPS53-210ENST00000571456 A0A0U1RQV5 110 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms