RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 GPATCH1Q9BRR8 931 aaKnown RBP3.27□□□□□ -1.89
NUP88-202ENST00000570937 NAA11Q9BSU3 229 aaPredicted RBP3.27□□□□□ -1.89
NUP88-202ENST00000570937 RBM24Q9BX46 236 aaKnown RBP3.27□□□□□ -1.89
NUP88-202ENST00000570937 TAPBPLQ9BX59 468 aa3.27□□□□□ -1.89
NUP88-202ENST00000570937 UCK2Q9BZX2 261 aa3.27□□□□□ -1.89
NUP88-202ENST00000570937 SLC38A1Q9H2H9 487 aa3.27□□□□□ -1.89
NUP88-202ENST00000570937 TMEM185BQ9H7F4 350 aa3.27□□□□□ -1.89
NUP88-202ENST00000570937 RNF122Q9H9V4 155 aa3.27□□□□□ -1.89
NUP88-202ENST00000570937 EFCAB1Q9HAE3 211 aa3.27□□□□□ -1.89
NUP88-202ENST00000570937 ACER3Q9NUN7 267 aa3.27□□□□□ -1.89
NUP88-202ENST00000570937 NDE1Q9NXR1 346 aa3.27□□□□□ -1.89
NUP88-202ENST00000570937 EMC3Q9P0I2 261 aa3.27□□□□□ -1.89
NUP88-202ENST00000570937 VAPAQ9P0L0 249 aa3.27□□□□□ -1.89
NUP88-202ENST00000570937 CLCF1Q9UBD9 225 aa3.27□□□□□ -1.89
NUP88-202ENST00000570937 RPS6KB2Q9UBS0 482 aa3.27□□□□□ -1.89
NUP88-202ENST00000570937 CHRNA9Q9UGM1 479 aa3.27□□□□□ -1.89
NUP88-202ENST00000570937 ANGPT4Q9Y264 503 aa3.27□□□□□ -1.89
NUP88-202ENST00000570937 TRAPPC4Q9Y296 219 aa3.27□□□□□ -1.89
NUP88-202ENST00000570937 ZNF443Q9Y2A4 671 aaPredicted RBP3.27□□□□□ -1.89
NUP88-202ENST00000570937 MOB4Q9Y3A3 225 aa3.27□□□□□ -1.89
NUP88-202ENST00000570937 ADGRG4Q8IZF6 3080 aa3.27□□□□□ -1.89
NUP88-202ENST00000570937 ZGRF1Q86YA3 2104 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 DSPPQ9NZW4 1301 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 SVILO95425 2214 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 LOC105371242A0A075B767 164 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 TMED7-TICAM2A0A0A6YYA0 188 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 A0A0J9YW62 118 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 LOC100653049A0A140TA62 436 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 A0A1W2PNV4 684 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 A8MVM7 634 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 A8MXE2 369 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 GPR171O14626 319 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 MRASO14807 208 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 OR2T1O43869 369 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 CXCL13O43927 109 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 KRT34O76011 436 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 TGM6O95932 706 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 OPN1LWP04000 364 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 YES1P07947 543 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 RPL35AP18077 110 aaKnown RBP3.26□□□□□ -1.89
NUP88-202ENST00000570937 RPS4Y1P22090 263 aaKnown RBP3.26□□□□□ -1.89
NUP88-202ENST00000570937 GATA2P23769 480 aaPredicted RBP3.26□□□□□ -1.89
NUP88-202ENST00000570937 EEF1B2P24534 225 aaKnown RBP3.26□□□□□ -1.89
NUP88-202ENST00000570937 GTF2E2P29084 291 aaKnown RBP3.26□□□□□ -1.89
NUP88-202ENST00000570937 IFNA8P32881 189 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 MNAT1P51948 309 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 ZNF136P52737 540 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 XGP55808 180 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 SLC35A1P78382 337 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 TFF3Q07654 80 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 TRAP1Q12931 704 aaKnown RBP3.26□□□□□ -1.89
NUP88-202ENST00000570937 SCARB2Q14108 478 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 CAPRIN1Q14444 709 aaKnown RBP3.26□□□□□ -1.89
NUP88-202ENST00000570937 PDK3Q15120 406 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 TOMM34Q15785 309 aaPredicted RBP3.26□□□□□ -1.89
NUP88-202ENST00000570937 MAPK14Q16539 360 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 TRMT5Q32P41 509 aaKnown RBP3.26□□□□□ -1.89
NUP88-202ENST00000570937 NDUFAF6Q330K2 333 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 TCTEX1D4Q5JR98 221 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 PAGE3Q5JUK9 113 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 ARMC4Q5T2S8 1044 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 MRPL2Q5T653 305 aaKnown RBP3.26□□□□□ -1.89
NUP88-202ENST00000570937 TMEM225Q6GV28 225 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 ZNF343Q6P1L6 599 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 ERICH5Q6P6B1 374 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 ULK3Q6PHR2 472 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 DLEU7Q6UYE1 221 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 ZNF836Q6ZNA1 936 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 TMPPEQ6ZT21 453 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 NCCRP1Q6ZVX7 275 aaPredicted RBP3.26□□□□□ -1.89
NUP88-202ENST00000570937 FCRLAQ7L513 359 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 SPATA21Q7Z572 469 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 NET1Q7Z628 596 aaPredicted RBP3.26□□□□□ -1.89
NUP88-202ENST00000570937 ARPINQ7Z6K5 226 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 LUZP2Q86TE4 346 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 RANBP3LQ86VV4 465 aaPredicted RBP3.26□□□□□ -1.89
NUP88-202ENST00000570937 ZNF100Q8IYN0 542 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 GCNT2Q8N0V5 402 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 CADM2Q8N3J6 435 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 FAM89BQ8N5H3 189 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 Q8NBF4 154 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 OR8J3Q8NGG0 315 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 OR52E4Q8NGH9 312 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 LZICQ8WZA0 190 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 PROX1Q92786 737 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 MAL2Q969L2 176 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 AURKBQ96GD4 344 aaPredicted RBP3.26□□□□□ -1.89
NUP88-202ENST00000570937 FOXN4Q96NZ1 517 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 ZNF317Q96PQ6 595 aaPredicted RBP3.26□□□□□ -1.89
NUP88-202ENST00000570937 OR5B2Q96R09 309 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 CGREF1Q99674 301 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 HOPXQ9BPY8 73 aaPredicted RBP3.26□□□□□ -1.89
NUP88-202ENST00000570937 OVOL2Q9BRP0 275 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 POTEKPQ9BYX7 375 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 FAM107BQ9H098 131 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 ZNF385DQ9H6B1 395 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 KAT8Q9H7Z6 458 aaKnown RBP3.26□□□□□ -1.89
NUP88-202ENST00000570937 TMEM27Q9HBJ8 222 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 MCCC2Q9HCC0 563 aa3.26□□□□□ -1.89
NUP88-202ENST00000570937 NGBQ9NPG2 151 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms