RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 RBP7Q96R05 134 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 CDRT15Q96T59 188 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 FAM234AQ9H0X4 552 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 SEMA6AQ9H2E6 1030 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 MAGIXQ9H6Y5 334 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 NMNAT1Q9HAN9 279 aaPredicted RBP9.13□□□□□ -0.95
VPS53-207ENST00000570510 IL1RAPQ9NPH3 570 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 ARL8BQ9NVJ2 186 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 TMCC3Q9ULS5 477 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 STARD10Q9Y365 291 aa9.13□□□□□ -0.95
VPS53-207ENST00000570510 A0A1B0GVI7 797 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 A0A1W2PPL8 197 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 A6NIZ1 184 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 C12orf71A8MTZ7 269 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 B2RBV5 119 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 F5H5P2 479 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 C3orf84H3BNL1 204 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 H1F0P07305 194 aaKnown RBP9.12□□□□□ -0.95
VPS53-207ENST00000570510 CST2P09228 141 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 RAC2P15153 192 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 IFNGR2P38484 337 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 PSMB10P40306 273 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 KIR2DS4P43632 304 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 OR1E2P47887 323 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 RASSF2P50749 326 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 EFNB2P52799 333 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 RAP1BP61224 184 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 RAP1AP62834 184 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 MXRA7P84157 204 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 GUCA2AQ02747 115 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 TRAP1Q12931 704 aaKnown RBP9.12□□□□□ -0.95
VPS53-207ENST00000570510 DCTN2Q13561 401 aaKnown RBP9.12□□□□□ -0.95
VPS53-207ENST00000570510 TRIM25Q14258 630 aaKnown RBP9.12□□□□□ -0.95
VPS53-207ENST00000570510 OR8B8Q15620 311 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 DNAL1Q4LDG9 190 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 SFRP4Q6FHJ7 346 aaPredicted RBP9.12□□□□□ -0.95
VPS53-207ENST00000570510 TRPM8Q7Z2W7 1104 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 VMO1Q7Z5L0 202 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 TSPYL5Q86VY4 417 aaPredicted RBP9.12□□□□□ -0.95
VPS53-207ENST00000570510 NKAIN4Q8IVV8 208 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 DEFB107AQ8IZN7 70 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 CMTM4Q8IZR5 234 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 CLDN22Q8N7P3 220 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 BHLHE23Q8NDY6 225 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 OR8G5Q8NG78 346 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 OR5L1Q8NGL2 311 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 BCAS4Q8TDM0 211 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 NABP1Q96AH0 204 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 BPIFA2Q96DR5 249 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 B9D2Q9BPU9 175 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 ALG12Q9BV10 488 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 MRPL13Q9BYD1 178 aaKnown RBP9.12□□□□□ -0.95
VPS53-207ENST00000570510 SIRPDQ9H106 197 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 POFUT1Q9H488 388 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 RAB18Q9NP72 206 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 INIPQ9NRY2 104 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 NDUFAF4Q9P032 175 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 ONECUT1Q9UBC0 465 aa9.12□□□□□ -0.95
VPS53-207ENST00000570510 COL7A1Q02388 2944 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 A0A1W2PRD5 423 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 A0A1W2PRF3 423 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 A0A1W2PRM7 423 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 FFAR1O14842 300 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 DOK2O60496 412 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 ATP5HO75947 161 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 ECDO95905 644 aaPredicted RBP9.11□□□□□ -0.95
VPS53-207ENST00000570510 SEMG1P04279 462 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 HMGA2P52926 109 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 UGT2B15P54855 530 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 COL10A1Q03692 680 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 FMODQ06828 376 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 CDONQ4KMG0 1287 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 OR2T2Q6IF00 324 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 LCN8Q6JVE9 175 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 ZNF730Q6ZMV8 503 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 BTN2A1Q7KYR7 527 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 VTCN1Q7Z7D3 282 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 IGFN1Q86VF2 1251 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 NDUFA11Q86Y39 141 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 TMEM255BQ8WV15 326 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 ASB10Q8WXI3 467 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 ASB9Q96DX5 294 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 GPX7Q96SL4 187 aaPredicted RBP9.11□□□□□ -0.95
VPS53-207ENST00000570510 TXNIPQ9H3M7 391 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 CNTD2Q9H8S5 307 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 TRIM36Q9NQ86 728 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 UFSP2Q9NUQ7 469 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 TMEM100Q9NV29 134 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 DNAJB11Q9UBS4 358 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 UGT2A1Q9Y4X1 527 aa9.11□□□□□ -0.95
VPS53-207ENST00000570510 A0A087WUU8 490 aa9.1□□□□□ -0.95
VPS53-207ENST00000570510 MEIOCA2RUB1 952 aa9.1□□□□□ -0.95
VPS53-207ENST00000570510 NPFFO15130 113 aa9.1□□□□□ -0.95
VPS53-207ENST00000570510 ARPC2O15144 300 aa9.1□□□□□ -0.95
VPS53-207ENST00000570510 NDUFA2O43678 99 aa9.1□□□□□ -0.95
VPS53-207ENST00000570510 OR10H3O60404 316 aa9.1□□□□□ -0.95
VPS53-207ENST00000570510 T-ENOLP0DO92 83 aa9.1□□□□□ -0.95
VPS53-207ENST00000570510 FPR3P25089 353 aa9.1□□□□□ -0.95
VPS53-207ENST00000570510 MSX2P35548 267 aaPredicted RBP9.1□□□□□ -0.95
VPS53-207ENST00000570510 MAGEA2P43356 314 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms