RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	LRRC75A	Q8NAA5	344 aa		13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	ADAT1	Q9BUB4	502 aa	Known RBP	13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	KAAG1	Q9UBP8	84 aa		13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	GRHPR	Q9UBQ7	328 aa		13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	COA3	Q9Y2R0	106 aa	Predicted RBP	13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	XKRY	O14609	159 aa		13.17	□□□□□ -0.3
CLK3-223	ENST00000568488	RGS16	O15492	202 aa	Predicted RBP	13.17	□□□□□ -0.3
CLK3-223	ENST00000568488	OR5F1	O95221	314 aa		13.17	□□□□□ -0.3
CLK3-223	ENST00000568488	CTLA4	P16410	223 aa		13.17	□□□□□ -0.3
CLK3-223	ENST00000568488	LSM6	P62312	80 aa	Known RBP	13.17	□□□□□ -0.3
CLK3-223	ENST00000568488	IKZF1	Q13422	519 aa		13.17	□□□□□ -0.3
CLK3-223	ENST00000568488	KRT71	Q3SY84	523 aa		13.17	□□□□□ -0.3
CLK3-223	ENST00000568488	ANKRD42	Q8N9B4	389 aa		13.17	□□□□□ -0.3
CLK3-223	ENST00000568488	H1FX	Q92522	213 aa	Known RBP	13.17	□□□□□ -0.3
CLK3-223	ENST00000568488	TNFRSF14	Q92956	283 aa		13.17	□□□□□ -0.3
CLK3-223	ENST00000568488	BPIFA2	Q96DR5	249 aa		13.17	□□□□□ -0.3
CLK3-223	ENST00000568488	COQ7	Q99807	217 aa		13.17	□□□□□ -0.3
CLK3-223	ENST00000568488	DCTN5	Q9BTE1	182 aa		13.17	□□□□□ -0.3
CLK3-223	ENST00000568488	SLC22A4	Q9H015	551 aa		13.17	□□□□□ -0.3
CLK3-223	ENST00000568488	SSU72	Q9NP77	194 aa	Known RBP	13.17	□□□□□ -0.3
CLK3-223	ENST00000568488	SERTAD4	Q9NUC0	356 aa		13.17	□□□□□ -0.3
CLK3-223	ENST00000568488	ATPIF1	Q9UII2	106 aa		13.17	□□□□□ -0.3
CLK3-223	ENST00000568488	RPS6KA6	Q9UK32	745 aa		13.17	□□□□□ -0.3
CLK3-223	ENST00000568488	NOP16	Q9Y3C1	178 aa	Known RBP	13.17	□□□□□ -0.3
CLK3-223	ENST00000568488	TEX13C	A0A0J9YWL9	993 aa		13.16	□□□□□ -0.3
CLK3-223	ENST00000568488		F5H5K5	113 aa		13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	C3orf84	H3BNL1	204 aa		13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	NDUFB3	O43676	98 aa		13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	CHST1	O43916	411 aa		13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	SLC16A7	O60669	478 aa		13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	SNN	O75324	88 aa	Predicted RBP	13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	LCAT	P04180	440 aa		13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	FAH	P16930	419 aa		13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	HOXD3	P31249	432 aa	Predicted RBP	13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	RPL4	P36578	427 aa	Known RBP	13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	CENPA	P49450	140 aa		13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	BMX	P51813	675 aa		13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	SLC35A2	P78381	396 aa		13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	CRIP3	Q6Q6R5	217 aa		13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	GLB1L2	Q8IW92	636 aa		13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	FAM216B	Q8N7L0	139 aa		13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	PLPP7	Q8NBV4	271 aa		13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	PAPD5	Q8NDF8	572 aa	Known RBP	13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	GJC3	Q8NFK1	279 aa		13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	HDHD2	Q9H0R4	259 aa		13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	ADAM18	Q9Y3Q7	739 aa		13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	CAPN7	Q9Y6W3	813 aa		13.16	□□□□□ -0.3
CLK3-223	ENST00000568488		U3KQK5	164 aa		13.16	□□□□□ -0.3
CLK3-223	ENST00000568488	PRSS37	A4D1T9	235 aa		13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	GMDS	O60547	372 aa		13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	KHDRBS3	O75525	346 aa	Known RBP	13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	PF4	P02776	101 aa		13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	MTPN	P58546	118 aa		13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	DOC2B	Q14184	412 aa		13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	MICB	Q29980	383 aa		13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	ARSJ	Q5FYB0	599 aa	Predicted RBP	13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	WDR38	Q5JTN6	314 aa		13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	TEX36	Q5VZQ5	186 aa		13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	NCR3LG1	Q68D85	454 aa		13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	CORO6	Q6QEF8	472 aa		13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	SLC36A1	Q7Z2H8	476 aa		13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	MRPL21	Q7Z2W9	205 aa	Known RBP	13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	OAF	Q86UD1	273 aa		13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	NAA40	Q86UY6	237 aa		13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	RASSF5	Q8WWW0	418 aa		13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	ACOT11	Q8WXI4	607 aa	Predicted RBP	13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	ZBTB9	Q96C00	473 aa		13.15	□□□□□ -0.3
CLK3-223	ENST00000568488		Q96M85	177 aa		13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	DMRTB1	Q96MA1	342 aa		13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	DDO	Q99489	341 aa		13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	ZNF702P	Q9H963	129 aa		13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	PRPF19	Q9UMS4	504 aa	Known RBP	13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	SF3B6	Q9Y3B4	125 aa	Known RBP	13.15	□□□□□ -0.3
CLK3-223	ENST00000568488	TENM2	Q9NT68	2774 aa		13.15	□□□□□ -0.31
CLK3-223	ENST00000568488	CD300LB	A8K4G0	201 aa		13.14	□□□□□ -0.31
CLK3-223	ENST00000568488	PTBP3	O95758	552 aa	Known RBP	13.14	□□□□□ -0.31
CLK3-223	ENST00000568488	LHB	P01229	141 aa		13.14	□□□□□ -0.31
CLK3-223	ENST00000568488	SELPLG	Q14242	412 aa		13.14	□□□□□ -0.31
CLK3-223	ENST00000568488	RSPO1	Q2MKA7	263 aa	Predicted RBP	13.14	□□□□□ -0.31
CLK3-223	ENST00000568488	KLHL22	Q53GT1	634 aa		13.14	□□□□□ -0.31
CLK3-223	ENST00000568488	MEST	Q5EB52	335 aa		13.14	□□□□□ -0.31
CLK3-223	ENST00000568488	DLEU7	Q6UYE1	221 aa		13.14	□□□□□ -0.31
CLK3-223	ENST00000568488	COLCA1	Q6ZS62	124 aa		13.14	□□□□□ -0.31
CLK3-223	ENST00000568488	RCC1L	Q96I51	464 aa	Known RBP	13.14	□□□□□ -0.31
CLK3-223	ENST00000568488	ZNF570	Q96NI8	536 aa		13.14	□□□□□ -0.31
CLK3-223	ENST00000568488	POLR2J2	Q9GZM3	115 aa	Known RBP	13.14	□□□□□ -0.31
CLK3-223	ENST00000568488	POLR2J3	Q9H1A7	115 aa	Known RBP	13.14	□□□□□ -0.31
CLK3-223	ENST00000568488	MEGF9	Q9H1U4	602 aa		13.14	□□□□□ -0.31
CLK3-223	ENST00000568488	GGT3P	A6NGU5	568 aa		13.13	□□□□□ -0.31
CLK3-223	ENST00000568488	EFCAB9	A8MZ26	197 aa		13.13	□□□□□ -0.31
CLK3-223	ENST00000568488	ACOT8	O14734	319 aa		13.13	□□□□□ -0.31
CLK3-223	ENST00000568488	AHCYL1	O43865	530 aa		13.13	□□□□□ -0.31
CLK3-223	ENST00000568488	ACSM4	P0C7M7	580 aa		13.13	□□□□□ -0.31
CLK3-223	ENST00000568488	POU1F1	P28069	291 aa		13.13	□□□□□ -0.31
CLK3-223	ENST00000568488	OR1E2	P47887	323 aa		13.13	□□□□□ -0.31
CLK3-223	ENST00000568488	SLC9A3	P48764	834 aa		13.13	□□□□□ -0.31
CLK3-223	ENST00000568488	BLMH	Q13867	455 aa		13.13	□□□□□ -0.31
CLK3-223	ENST00000568488	MEP1B	Q16820	701 aa		13.13	□□□□□ -0.31
CLK3-223	ENST00000568488	LRRC10	Q5BKY1	277 aa		13.13	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 45 ms