RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 UFD1Q92890 307 aa11.57□□□□□ -0.56
CLK3-218ENST00000566926 OR5M11Q96RB7 305 aa11.57□□□□□ -0.56
CLK3-218ENST00000566926 VRK1Q99986 396 aaPredicted RBP11.57□□□□□ -0.56
CLK3-218ENST00000566926 CDADC1Q9BWV3 514 aa11.57□□□□□ -0.56
CLK3-218ENST00000566926 RAB1BQ9H0U4 201 aa11.57□□□□□ -0.56
CLK3-218ENST00000566926 RBM38Q9H0Z9 239 aaKnown RBP11.57□□□□□ -0.56
CLK3-218ENST00000566926 MRPL22Q9NWU5 206 aaKnown RBP11.57□□□□□ -0.56
CLK3-218ENST00000566926 RSL24D1Q9UHA3 163 aaKnown RBP11.57□□□□□ -0.56
CLK3-218ENST00000566926 TIMM10BQ9Y5J6 103 aa11.57□□□□□ -0.56
CLK3-218ENST00000566926 YLPM1P49750 1951 aaKnown RBP11.57□□□□□ -0.56
CLK3-218ENST00000566926 CCDC160A6NGH7 325 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 TVP23AA6NH52 213 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 NDUFS7O75251 213 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 ZNF254O75437 659 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 F12P00748 615 aaPredicted RBP11.56□□□□□ -0.56
CLK3-218ENST00000566926 SPARCP09486 303 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 CPEP16870 476 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 ZNF32P17041 273 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 PCSK6P29122 969 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 TGM4P49221 684 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 GBX2P52951 348 aaPredicted RBP11.56□□□□□ -0.56
CLK3-218ENST00000566926 RIPPLY3P57055 190 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 TRAM1Q15629 374 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 PABPC1L2AQ5JQF8 200 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 GDPGP1Q6ZNW5 385 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 DPY19L4Q7Z388 723 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 CLVS1Q8IUQ0 354 aaPredicted RBP11.56□□□□□ -0.56
CLK3-218ENST00000566926 C1orf174Q8IYL3 243 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 SPRYD4Q8WW59 207 aaPredicted RBP11.56□□□□□ -0.56
CLK3-218ENST00000566926 GATAD2BQ8WXI9 593 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 HTRA1Q92743 480 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 MRPL24Q96A35 216 aaKnown RBP11.56□□□□□ -0.56
CLK3-218ENST00000566926 TMIGD2Q96BF3 282 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 YIPF6Q96EC8 236 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 OPALINQ96PE5 141 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 TBX5Q99593 518 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 COQ7Q99807 217 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 MROQ9BYG7 248 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 BCL2L14Q9BZR8 327 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 DYNLRB1Q9NP97 96 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 MYOZ1Q9NP98 299 aaPredicted RBP11.56□□□□□ -0.56
CLK3-218ENST00000566926 POLE4Q9NR33 117 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 NDUFB11Q9NX14 153 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 EIF3KQ9UBQ5 218 aaKnown RBP11.56□□□□□ -0.56
CLK3-218ENST00000566926 CYB5R1Q9UHQ9 305 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 GPR160Q9UJ42 338 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 ENPP5Q9UJA9 477 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 CEPT1Q9Y6K0 416 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 ABCA1O95477 2261 aa11.56□□□□□ -0.56
CLK3-218ENST00000566926 CSPG4Q6UVK1 2322 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 METTL15A6NJ78 407 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 SMAD7O15105 426 aaKnown RBP11.55□□□□□ -0.56
CLK3-218ENST00000566926 GABARAPO95166 117 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 CD1AP06126 327 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 CD36P16671 472 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 GALP22466 123 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 STOMP27105 288 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 DCTDP32321 178 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 GDI2P50395 445 aaKnown RBP11.55□□□□□ -0.56
CLK3-218ENST00000566926 OR2G6Q5TZ20 316 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 GPR107Q5VW38 600 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 RGS7BPQ6MZT1 257 aaPredicted RBP11.55□□□□□ -0.56
CLK3-218ENST00000566926 CLEC9AQ6UXN8 241 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 DNM1P46Q6ZS02 220 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 VASH1Q7L8A9 365 aaPredicted RBP11.55□□□□□ -0.56
CLK3-218ENST00000566926 ZNF679Q8IYX0 411 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 OR2AJ1Q8NGZ0 328 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 NEU4Q8WWR8 484 aaPredicted RBP11.55□□□□□ -0.56
CLK3-218ENST00000566926 C11orf40Q8WZ69 217 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 FAM168AQ92567 244 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 C4orf36Q96KX1 117 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 DOK1Q99704 481 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 FUNDC2Q9BWH2 189 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 REG4Q9BYZ8 158 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 MS4A5Q9H3V2 200 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 NIPAL2Q9H841 368 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 POLR1DQ9Y2S0 133 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 TLN2Q9Y4G6 2542 aa11.55□□□□□ -0.56
CLK3-218ENST00000566926 J3QLW9 94 aa11.54□□□□□ -0.56
CLK3-218ENST00000566926 SLC22A1O15245 554 aa11.54□□□□□ -0.56
CLK3-218ENST00000566926 SYNGR3O43761 229 aa11.54□□□□□ -0.56
CLK3-218ENST00000566926 SLC25A16P16260 332 aa11.54□□□□□ -0.56
CLK3-218ENST00000566926 ZNF19P17023 458 aa11.54□□□□□ -0.56
CLK3-218ENST00000566926 APEX1P27695 318 aaKnown RBP11.54□□□□□ -0.56
CLK3-218ENST00000566926 GABRA5P31644 462 aa11.54□□□□□ -0.56
CLK3-218ENST00000566926 LIPAP38571 399 aa11.54□□□□□ -0.56
CLK3-218ENST00000566926 PDLIM4P50479 330 aa11.54□□□□□ -0.56
CLK3-218ENST00000566926 UCP2P55851 309 aa11.54□□□□□ -0.56
CLK3-218ENST00000566926 PSG4Q00888 419 aa11.54□□□□□ -0.56
CLK3-218ENST00000566926 SCRN3Q0VDG4 424 aa11.54□□□□□ -0.56
CLK3-218ENST00000566926 AQP6Q13520 282 aa11.54□□□□□ -0.56
CLK3-218ENST00000566926 EIF2B1Q14232 305 aaKnown RBP11.54□□□□□ -0.56
CLK3-218ENST00000566926 MOGQ16653 247 aa11.54□□□□□ -0.56
CLK3-218ENST00000566926 TSTQ16762 297 aaKnown RBP11.54□□□□□ -0.56
CLK3-218ENST00000566926 ZNF684Q5T5D7 378 aa11.54□□□□□ -0.56
CLK3-218ENST00000566926 RPL22L1Q6P5R6 122 aaKnown RBP11.54□□□□□ -0.56
CLK3-218ENST00000566926 ARL9Q6T311 187 aa11.54□□□□□ -0.56
CLK3-218ENST00000566926 LYPD4Q6UWN0 246 aa11.54□□□□□ -0.56
CLK3-218ENST00000566926 PHC2Q8IXK0 858 aa11.54□□□□□ -0.56
CLK3-218ENST00000566926 CIARTQ8N365 385 aaPredicted RBP11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms