RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 SPRY3O43610 288 aa16.65■□□□□ 0.26
CLN3-225ENST00000566824 MPZL2O60487 215 aa16.65■□□□□ 0.26
CLN3-225ENST00000566824 SRSF10O75494 262 aaKnown RBP16.65■□□□□ 0.26
CLN3-225ENST00000566824 PNPP00491 289 aa16.65■□□□□ 0.26
CLN3-225ENST00000566824 IGHV1-46P01743 117 aa16.65■□□□□ 0.26
CLN3-225ENST00000566824 OR2T7P0C7T2 308 aa16.65■□□□□ 0.26
CLN3-225ENST00000566824 ATP6V1E1P36543 226 aa16.65■□□□□ 0.26
CLN3-225ENST00000566824 ZNF81P51508 661 aa16.65■□□□□ 0.26
CLN3-225ENST00000566824 PSMA6P60900 246 aaKnown RBP16.65■□□□□ 0.26
CLN3-225ENST00000566824 POU4F2Q12837 409 aa16.65■□□□□ 0.26
CLN3-225ENST00000566824 TSTQ16762 297 aaKnown RBP16.65■□□□□ 0.26
CLN3-225ENST00000566824 CLEC12BQ2HXU8 276 aa16.65■□□□□ 0.26
CLN3-225ENST00000566824 KCTD18Q6PI47 426 aaPredicted RBP16.65■□□□□ 0.26
CLN3-225ENST00000566824 PRSS57Q6UWY2 283 aa16.65■□□□□ 0.26
CLN3-225ENST00000566824 ZNF679Q8IYX0 411 aa16.65■□□□□ 0.26
CLN3-225ENST00000566824 BHLHE23Q8NDY6 225 aa16.65■□□□□ 0.26
CLN3-225ENST00000566824 OR2T27Q8NH04 317 aa16.65■□□□□ 0.26
CLN3-225ENST00000566824 MNTQ99583 582 aa16.65■□□□□ 0.26
CLN3-225ENST00000566824 RHNO1Q9BSD3 238 aa16.65■□□□□ 0.26
CLN3-225ENST00000566824 SOX7Q9BT81 388 aa16.65■□□□□ 0.26
CLN3-225ENST00000566824 REPIN1Q9BWE0 567 aaKnown RBP16.65■□□□□ 0.26
CLN3-225ENST00000566824 RAB1BQ9H0U4 201 aa16.65■□□□□ 0.26
CLN3-225ENST00000566824 MS4A5Q9H3V2 200 aa16.65■□□□□ 0.26
CLN3-225ENST00000566824 FAM206AQ9NX38 181 aa16.65■□□□□ 0.26
CLN3-225ENST00000566824 MYRFQ9Y2G1 1151 aa16.65■□□□□ 0.26
CLN3-225ENST00000566824 TEP1Q99973 2627 aaKnown RBP16.64■□□□□ 0.25
CLN3-225ENST00000566824 ZANQ9Y493 2812 aa16.64■□□□□ 0.25
CLN3-225ENST00000566824 H0YAE9 185 aa16.64■□□□□ 0.25
CLN3-225ENST00000566824 CCL8P80075 99 aa16.64■□□□□ 0.25
CLN3-225ENST00000566824 MALLQ13021 153 aa16.64■□□□□ 0.25
CLN3-225ENST00000566824 DEGS2Q6QHC5 323 aa16.64■□□□□ 0.25
CLN3-225ENST00000566824 TGIF2LYQ8IUE0 185 aa16.64■□□□□ 0.25
CLN3-225ENST00000566824 CIARTQ8N365 385 aaPredicted RBP16.64■□□□□ 0.25
CLN3-225ENST00000566824 OR8B12Q8NGG6 310 aa16.64■□□□□ 0.25
CLN3-225ENST00000566824 RNF166Q96A37 237 aaPredicted RBP16.64■□□□□ 0.25
CLN3-225ENST00000566824 PGAM5Q96HS1 289 aa16.64■□□□□ 0.25
CLN3-225ENST00000566824 LYZL4Q96KX0 146 aa16.64■□□□□ 0.25
CLN3-225ENST00000566824 MROQ9BYG7 248 aa16.64■□□□□ 0.25
CLN3-225ENST00000566824 BARX1Q9HBU1 254 aaPredicted RBP16.64■□□□□ 0.25
CLN3-225ENST00000566824 CR1P17927 2039 aa16.63■□□□□ 0.25
CLN3-225ENST00000566824 MED13LQ71F56 2210 aa16.63■□□□□ 0.25
CLN3-225ENST00000566824 H0YL77 283 aa16.63■□□□□ 0.25
CLN3-225ENST00000566824 TNK1Q13470 666 aa16.63■□□□□ 0.25
CLN3-225ENST00000566824 GFOD2Q3B7J2 385 aa16.63■□□□□ 0.25
CLN3-225ENST00000566824 PGAP1Q75T13 922 aa16.63■□□□□ 0.25
CLN3-225ENST00000566824 MRPL21Q7Z2W9 205 aaKnown RBP16.63■□□□□ 0.25
CLN3-225ENST00000566824 SNX33Q8WV41 574 aa16.63■□□□□ 0.25
CLN3-225ENST00000566824 SPSB4Q96A44 273 aa16.63■□□□□ 0.25
CLN3-225ENST00000566824 Q96MT0 163 aa16.63■□□□□ 0.25
CLN3-225ENST00000566824 VCXQ9H320 206 aa16.63■□□□□ 0.25
CLN3-225ENST00000566824 IGHV4-30-2A0A087WSY4 118 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 IQCF6A8MYZ5 107 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 PHYHO14832 338 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 ZNF254O75437 659 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 DAOP14920 347 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 COL8A2P25067 703 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 RIDAP52758 137 aaKnown RBP16.62■□□□□ 0.25
CLN3-225ENST00000566824 EGR3Q06889 387 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 CDK5R2Q13319 367 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 IL18R1Q13478 541 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 MOGQ16653 247 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 TP53I3Q53FA7 332 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 OR8G5Q8NG78 346 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 OR52I1Q8NGK6 324 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 FBLIM1Q8WUP2 373 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 NEU4Q8WWR8 484 aaPredicted RBP16.62■□□□□ 0.25
CLN3-225ENST00000566824 YIPF5Q969M3 257 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 REEP6Q96HR9 211 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 ZNF649Q9BS31 505 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 PPP1R3EQ9H7J1 279 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 NIPAL2Q9H841 368 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 GPR160Q9UJ42 338 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 FBXO9Q9UK97 447 aaPredicted RBP16.62■□□□□ 0.25
CLN3-225ENST00000566824 CACNG2Q9Y698 323 aa16.62■□□□□ 0.25
CLN3-225ENST00000566824 TANC2Q9HCD6 1990 aa16.61■□□□□ 0.25
CLN3-225ENST00000566824 TMEM269A0A1B0GVZ9 245 aa16.61■□□□□ 0.25
CLN3-225ENST00000566824 PLSCR5A0PG75 271 aa16.61■□□□□ 0.25
CLN3-225ENST00000566824 CD300LBA8K4G0 201 aa16.61■□□□□ 0.25
CLN3-225ENST00000566824 H0YJX3 145 aa16.61■□□□□ 0.25
CLN3-225ENST00000566824 MLNRO43193 412 aa16.61■□□□□ 0.25
CLN3-225ENST00000566824 RPP14O95059 124 aaKnown RBP16.61■□□□□ 0.25
CLN3-225ENST00000566824 APOC1P02654 83 aa16.61■□□□□ 0.25
CLN3-225ENST00000566824 FAM3AP98173 230 aa16.61■□□□□ 0.25
CLN3-225ENST00000566824 CARTPTQ16568 116 aa16.61■□□□□ 0.25
CLN3-225ENST00000566824 IZUMO2Q6UXV1 221 aa16.61■□□□□ 0.25
CLN3-225ENST00000566824 C8orf59Q8N0T1 100 aaPredicted RBP16.61■□□□□ 0.25
CLN3-225ENST00000566824 YIPF7Q8N8F6 280 aa16.61■□□□□ 0.25
CLN3-225ENST00000566824 SETD9Q8NE22 299 aa16.61■□□□□ 0.25
CLN3-225ENST00000566824 SIGLEC11Q96RL6 698 aa16.61■□□□□ 0.25
CLN3-225ENST00000566824 PBOV1Q9GZY1 135 aa16.61■□□□□ 0.25
CLN3-225ENST00000566824 G6PC2Q9NQR9 355 aa16.61■□□□□ 0.25
CLN3-225ENST00000566824 MRPS18AQ9NVS2 196 aaKnown RBP16.61■□□□□ 0.25
CLN3-225ENST00000566824 hCG_38984A0A1B0GV85 526 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 DAPL1A0PJW8 107 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 METTL15A6NJ78 407 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 XRCC2O43543 280 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 IGHA1P01876 353 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 HLA-DPB1P04440 258 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 ADH4P08319 380 aa16.6■□□□□ 0.25
CLN3-225ENST00000566824 DCTDP32321 178 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms