RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 ERGIC1Q969X5 290 aa18.84■□□□□ 0.61
CLN3-215ENST00000565236 COPS4Q9BT78 406 aa18.84■□□□□ 0.61
CLN3-215ENST00000565236 SSBP3Q9BWW4 388 aaPredicted RBP18.84■□□□□ 0.61
CLN3-215ENST00000565236 SLC22A4Q9H015 551 aa18.84■□□□□ 0.61
CLN3-215ENST00000565236 CENPMQ9NSP4 180 aa18.84■□□□□ 0.61
CLN3-215ENST00000565236 ARMC1Q9NVT9 282 aa18.84■□□□□ 0.61
CLN3-215ENST00000565236 NOP16Q9Y3C1 178 aaKnown RBP18.84■□□□□ 0.61
CLN3-215ENST00000565236 PPIAL4AQ9Y536 164 aa18.84■□□□□ 0.61
CLN3-215ENST00000565236 NBEAL1Q6ZS30 2694 aa18.84■□□□□ 0.61
CLN3-215ENST00000565236 RIIAD1A6NNX1 92 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 CD300LBA8K4G0 201 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 ZNF593O00488 134 aaPredicted RBP18.83■□□□□ 0.6
CLN3-215ENST00000565236 FSTL3O95633 263 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 RAP2AP10114 183 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 SPI1P17947 270 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 CA6P23280 308 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 OTX1P32242 354 aaPredicted RBP18.83■□□□□ 0.6
CLN3-215ENST00000565236 PMELP40967 661 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 SLC25A1P53007 311 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 ZNF92Q03936 586 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 MAB21L1Q13394 359 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 OR8G1Q15617 311 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 SNAI3Q3KNW1 292 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 KLBQ86Z14 1044 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 OR6K6Q8NGW6 343 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 GCDHQ92947 438 aaPredicted RBP18.83■□□□□ 0.6
CLN3-215ENST00000565236 DVL3Q92997 716 aaPredicted RBP18.83■□□□□ 0.6
CLN3-215ENST00000565236 CCDC124Q96CT7 223 aaKnown RBP18.83■□□□□ 0.6
CLN3-215ENST00000565236 SLAMF6Q96DU3 332 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 ASB9Q96DX5 294 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 PLEKHA8Q96JA3 519 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 TMEM246Q9BRR3 403 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 NMNAT2Q9BZQ4 307 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 NTN4Q9HB63 628 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 DOCK11Q5JSL3 2073 aa18.83■□□□□ 0.6
CLN3-215ENST00000565236 TENM1Q9UKZ4 2725 aa18.82■□□□□ 0.6
CLN3-215ENST00000565236 GGT3PA6NGU5 568 aa18.82■□□□□ 0.6
CLN3-215ENST00000565236 PSKH1P11801 424 aa18.82■□□□□ 0.6
CLN3-215ENST00000565236 CD200P41217 278 aa18.82■□□□□ 0.6
CLN3-215ENST00000565236 PRKXP51817 358 aa18.82■□□□□ 0.6
CLN3-215ENST00000565236 BLVRAP53004 296 aa18.82■□□□□ 0.6
CLN3-215ENST00000565236 GNB2P62879 340 aa18.82■□□□□ 0.6
CLN3-215ENST00000565236 PCK2Q16822 640 aa18.82■□□□□ 0.6
CLN3-215ENST00000565236 TEX30Q5JUR7 227 aa18.82■□□□□ 0.6
CLN3-215ENST00000565236 FAM201AQ5SY85 155 aa18.82■□□□□ 0.6
CLN3-215ENST00000565236 RBMS3Q6XE24 437 aaKnown RBP18.82■□□□□ 0.6
CLN3-215ENST00000565236 OR10G2Q8NGC3 310 aa18.82■□□□□ 0.6
CLN3-215ENST00000565236 OR2AE1Q8NHA4 323 aa18.82■□□□□ 0.6
CLN3-215ENST00000565236 NEIL1Q96FI4 390 aaPredicted RBP18.82■□□□□ 0.6
CLN3-215ENST00000565236 KCNJ15Q99712 375 aa18.82■□□□□ 0.6
CLN3-215ENST00000565236 UFSP2Q9NUQ7 469 aa18.82■□□□□ 0.6
CLN3-215ENST00000565236 TAS2R1Q9NYW7 299 aa18.82■□□□□ 0.6
CLN3-215ENST00000565236 NUP50Q9UKX7 468 aa18.82■□□□□ 0.6
CLN3-215ENST00000565236 N6AMT1Q9Y5N5 214 aa18.82■□□□□ 0.6
CLN3-215ENST00000565236 GMDSO60547 372 aa18.81■□□□□ 0.6
CLN3-215ENST00000565236 CLUP10909 449 aa18.81■□□□□ 0.6
CLN3-215ENST00000565236 ZNF3P17036 446 aa18.81■□□□□ 0.6
CLN3-215ENST00000565236 GK3PQ14409 553 aa18.81■□□□□ 0.6
CLN3-215ENST00000565236 ZNF404Q494X3 552 aa18.81■□□□□ 0.6
CLN3-215ENST00000565236 GLYATL3Q5SZD4 288 aa18.81■□□□□ 0.6
CLN3-215ENST00000565236 CD300LDQ6UXZ3 194 aa18.81■□□□□ 0.6
CLN3-215ENST00000565236 NLRC3Q7RTR2 1065 aa18.81■□□□□ 0.6
CLN3-215ENST00000565236 TEX47Q8TBZ9 253 aa18.81■□□□□ 0.6
CLN3-215ENST00000565236 Q8TCH9 128 aa18.81■□□□□ 0.6
CLN3-215ENST00000565236 GIPC3Q8TF64 312 aa18.81■□□□□ 0.6
CLN3-215ENST00000565236 CLPTM1LQ96KA5 538 aa18.81■□□□□ 0.6
CLN3-215ENST00000565236 FEVQ99581 238 aa18.81■□□□□ 0.6
CLN3-215ENST00000565236 CHID1Q9BWS9 393 aa18.81■□□□□ 0.6
CLN3-215ENST00000565236 C1orf21Q9H246 121 aa18.81■□□□□ 0.6
CLN3-215ENST00000565236 FAM20BO75063 409 aa18.8■□□□□ 0.6
CLN3-215ENST00000565236 CST1P01037 141 aa18.8■□□□□ 0.6
CLN3-215ENST00000565236 CD80P33681 288 aa18.8■□□□□ 0.6
CLN3-215ENST00000565236 SLC15A1P46059 708 aa18.8■□□□□ 0.6
CLN3-215ENST00000565236 PAX8Q06710 450 aa18.8■□□□□ 0.6
CLN3-215ENST00000565236 MPPED2Q15777 294 aa18.8■□□□□ 0.6
CLN3-215ENST00000565236 PRAMEF6Q5VXH4 476 aa18.8■□□□□ 0.6
CLN3-215ENST00000565236 BTNL3Q6UXE8 466 aa18.8■□□□□ 0.6
CLN3-215ENST00000565236 OR8B3Q8NGG8 313 aa18.8■□□□□ 0.6
CLN3-215ENST00000565236 OR8B2Q96RD0 313 aa18.8■□□□□ 0.6
CLN3-215ENST00000565236 NIPSNAP1Q9BPW8 284 aa18.8■□□□□ 0.6
CLN3-215ENST00000565236 THTPAQ9BU02 230 aa18.8■□□□□ 0.6
CLN3-215ENST00000565236 ADAT1Q9BUB4 502 aaKnown RBP18.8■□□□□ 0.6
CLN3-215ENST00000565236 FN3KRPQ9HA64 309 aa18.8■□□□□ 0.6
CLN3-215ENST00000565236 CMC2Q9NRP2 79 aa18.8■□□□□ 0.6
CLN3-215ENST00000565236 C5orf63A6NC05 138 aa18.79■□□□□ 0.6
CLN3-215ENST00000565236 ZNF878C9JN71 531 aa18.79■□□□□ 0.6
CLN3-215ENST00000565236 H3BN98 237 aa18.79■□□□□ 0.6
CLN3-215ENST00000565236 GNGT2O14610 69 aa18.79■□□□□ 0.6
CLN3-215ENST00000565236 SLC2A1P11166 492 aa18.79■□□□□ 0.6
CLN3-215ENST00000565236 KLF17Q5JT82 389 aaPredicted RBP18.79■□□□□ 0.6
CLN3-215ENST00000565236 LRRN1Q6UXK5 716 aa18.79■□□□□ 0.6
CLN3-215ENST00000565236 SPATC1Q76KD6 591 aa18.79■□□□□ 0.6
CLN3-215ENST00000565236 ZDHHC22Q8N966 263 aa18.79■□□□□ 0.6
CLN3-215ENST00000565236 RAB40AQ8WXH6 277 aa18.79■□□□□ 0.6
CLN3-215ENST00000565236 OTULINQ96BN8 352 aa18.79■□□□□ 0.6
CLN3-215ENST00000565236 OPA3Q9H6K4 179 aa18.79■□□□□ 0.6
CLN3-215ENST00000565236 ESM1Q9NQ30 184 aa18.79■□□□□ 0.6
CLN3-215ENST00000565236 MRPL15Q9P015 296 aaKnown RBP18.79■□□□□ 0.6
CLN3-215ENST00000565236 RNF7Q9UBF6 113 aa18.79■□□□□ 0.6
CLN3-215ENST00000565236 ZNF69Q9UC07 566 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms