RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 CDK5R2Q13319 367 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 MAB21L1Q13394 359 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 OCLNQ16625 522 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 NKPD1Q17RQ9 610 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 SLC25A30Q5SVS4 291 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 DMRTA1Q5VZB9 504 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 USP51Q70EK9 711 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 WDR86Q86TI4 376 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 SLC35F2Q8IXU6 374 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 ZNF786Q8N393 782 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 BHLHE23Q8NDY6 225 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 OR10AD1Q8NGE0 317 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 OR8B12Q8NGG6 310 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 OR8J1Q8NGP2 316 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 SPSB4Q96A44 273 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 OR8B4Q96RC9 309 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 REG4Q9BYZ8 158 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 YIPF3Q9GZM5 350 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 AMBNQ9NP70 447 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 BRD7Q9NPI1 651 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 G6PC2Q9NQR9 355 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 ZNF275Q9NSD4 429 aaPredicted RBP7.81□□□□□ -1.16
VPS35-206ENST00000565228 EDARQ9UNE0 448 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.8□□□□□ -1.16
VPS35-206ENST00000565228 hCG_38984A0A1B0GV85 526 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 CDC14BO60729 498 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 ADH4P08319 380 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 INHBBP09529 407 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 GIFP27352 417 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 GCH1P30793 250 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 ZNF81P51508 661 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 BLVRAP53004 296 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 TPTEP56180 551 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 ISL1P61371 349 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 ECH1Q13011 328 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 DMRTC1Q5HYR2 192 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 ZNF691Q5VV52 312 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 DRAM2Q6UX65 266 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 FAM57BQ71RH2 274 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 ZNF283Q8N7M2 679 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 OR8G5Q8NG78 346 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 CNIH3Q8TBE1 160 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 UBASH3BQ8TF42 649 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 ITLN1Q8WWA0 313 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 NEU4Q8WWR8 484 aaPredicted RBP7.8□□□□□ -1.16
VPS35-206ENST00000565228 FAM168AQ92567 244 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 STMN2Q93045 179 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 LGALS12Q96DT0 336 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 C18orf12Q96KH6 178 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 SIGLEC11Q96RL6 698 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 CNN2Q99439 309 aaKnown RBP7.8□□□□□ -1.16
VPS35-206ENST00000565228 SLC30A2Q9BRI3 323 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 RAB1BQ9H0U4 201 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 SMPD3Q9NY59 655 aaPredicted RBP7.8□□□□□ -1.16
VPS35-206ENST00000565228 MYRFQ9Y2G1 1151 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 PCDHGB5Q9Y5G0 923 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 GMPPBQ9Y5P6 360 aa7.8□□□□□ -1.16
VPS35-206ENST00000565228 NSD1Q96L73 2696 aaPredicted RBP7.79□□□□□ -1.16
VPS35-206ENST00000565228 LOC100289279A0A1B0GTE1 492 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 A0A1B0GTI1 187 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 SLC22A31A6NKX4 558 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 CD300LBA8K4G0 201 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 F5H5P2 479 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 H3BSA7 217 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 J3QW42 95 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 TIMM8AO60220 97 aaPredicted RBP7.79□□□□□ -1.16
VPS35-206ENST00000565228 LMX1BO60663 402 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 CD55P08174 381 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 H2BFMP0C1H6 154 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 NR4A2P43354 598 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 SLC6A9P48067 706 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 RGS6P49758 472 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 RAD23AP54725 363 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 PSMA6P60900 246 aaKnown RBP7.79□□□□□ -1.16
VPS35-206ENST00000565228 GRB2P62993 217 aaKnown RBP7.79□□□□□ -1.16
VPS35-206ENST00000565228 ZNF91Q05481 1191 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 CARTPTQ16568 116 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 FAM201AQ5SY85 155 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 AVPI1Q5T686 147 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 ZNF322Q6U7Q0 402 aaPredicted RBP7.79□□□□□ -1.16
VPS35-206ENST00000565228 C11orf53Q8IXP5 236 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 C10orf67Q8IYJ2 551 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 ZNF454Q8N9F8 522 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 OR2Z1Q8NG97 314 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 OR56B2PQ8NGI1 322 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 ZNF420Q8TAQ5 688 aaPredicted RBP7.79□□□□□ -1.16
VPS35-206ENST00000565228 FBLIM1Q8WUP2 373 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 SGCDQ92629 289 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 SPTSSAQ969W0 71 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 RNFT2Q96EX2 444 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 MS4A5Q9H3V2 200 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 RNPEPL1Q9HAU8 725 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 CLN6Q9NWW5 311 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 NKIRAS2Q9NYR9 191 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 WARS2Q9UGM6 360 aaKnown RBP7.79□□□□□ -1.16
VPS35-206ENST00000565228 LAMP5Q9UJQ1 280 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 SLC22A13Q9Y226 551 aa7.79□□□□□ -1.16
VPS35-206ENST00000565228 EXOGQ9Y2C4 368 aaKnown RBP7.79□□□□□ -1.16
VPS35-206ENST00000565228 E9PI62 339 aa7.78□□□□□ -1.16
VPS35-206ENST00000565228 TBX1O43435 398 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms