RNA–Protein interactions for RNA: ENST00000564703.1

RAB40C-208, Transcript of RAB40C, member RAS oncogene family, human

TSL 3

Gene RAB40C, Length 921 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB40C-208	ENST00000564703	MRPL48	Q96GC5	212 aa	Known RBP	13.65	□□□□□ -0.22
RAB40C-208	ENST00000564703	ADI1	Q9BV57	179 aa		13.65	□□□□□ -0.22
RAB40C-208	ENST00000564703	OPA3	Q9H6K4	179 aa		13.65	□□□□□ -0.22
RAB40C-208	ENST00000564703	TMEM100	Q9NV29	134 aa		13.65	□□□□□ -0.22
RAB40C-208	ENST00000564703	NKIRAS2	Q9NYR9	191 aa		13.65	□□□□□ -0.22
RAB40C-208	ENST00000564703	COPS3	Q9UNS2	423 aa		13.65	□□□□□ -0.22
RAB40C-208	ENST00000564703	LRP12	Q9Y561	859 aa		13.65	□□□□□ -0.22
RAB40C-208	ENST00000564703		A0A1W2PQL4	384 aa	Predicted RBP	13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	ACOD1	A6NK06	481 aa		13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703		H0YJX3	145 aa		13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	FADS2	O95864	444 aa	Known RBP	13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	DAO	P14920	347 aa		13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	GABRB1	P18505	474 aa		13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	ACTC1	P68032	377 aa		13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	ACTA1	P68133	377 aa		13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	CCL8	P80075	99 aa		13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	TST	Q16762	297 aa	Known RBP	13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	ZNF829	Q3KNS6	432 aa	Predicted RBP	13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	SNAI3	Q3KNW1	292 aa		13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	PLEKHG7	Q6ZR37	379 aa		13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	C8orf59	Q8N0T1	100 aa	Predicted RBP	13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	YIPF7	Q8N8F6	280 aa		13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	OR8G5	Q8NG78	346 aa		13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	OR13G1	Q8NGZ3	307 aa		13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	REPIN1	Q9BWE0	567 aa	Known RBP	13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	TTTY10	Q9BZA0	68 aa		13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	RGCC	Q9H4X1	137 aa		13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	MSL2	Q9HCI7	577 aa		13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	HSPE1-MOB4	S4R3N1	261 aa		13.64	□□□□□ -0.23
RAB40C-208	ENST00000564703	LOC390937	A0A1W2PQ73	354 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	METTL15	A6NJ78	407 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	LY6H	O94772	140 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	ATP6V1G2	O95670	118 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	CLIC3	O95833	236 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	TACSTD2	P09758	323 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	CD99	P14209	185 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	DDOST	P39656	456 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	ZNF92	Q03936	586 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	GFOD2	Q3B7J2	385 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	FAM209A	Q5JX71	171 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	GLYATL3	Q5SZD4	288 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	KCTD20	Q7Z5Y7	419 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	ACBD7	Q8N6N7	88 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	ZNF525	Q8N782	197 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	BHLHE23	Q8NDY6	225 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	OR2Z1	Q8NG97	314 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	OR2AE1	Q8NHA4	323 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	RDH5	Q92781	318 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	SGK3	Q96BR1	496 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	AMBN	Q9NP70	447 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	GTF2A1L	Q9UNN4	478 aa		13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	NOP16	Q9Y3C1	178 aa	Known RBP	13.63	□□□□□ -0.23
RAB40C-208	ENST00000564703	IRGM	A1A4Y4	181 aa		13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	CD300LB	A8K4G0	201 aa		13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	IQCF6	A8MYZ5	107 aa		13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	SULT1C4	O75897	302 aa		13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	IGHV1-46	P01743	117 aa		13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	DBT	P11182	482 aa	Known RBP	13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	MAGEB1	P43366	347 aa		13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	MMP16	P51512	607 aa		13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	PSMA6	P60900	246 aa	Known RBP	13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	TNFAIP6	P98066	277 aa	Predicted RBP	13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	ZNF91	Q05481	1191 aa		13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	RAB40B	Q12829	278 aa		13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	CDK5R2	Q13319	367 aa		13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	TNK1	Q13470	666 aa		13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	SNCB	Q16143	134 aa		13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	FAM220A	Q7Z4H9	259 aa		13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	ZNF786	Q8N393	782 aa		13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	ZNF540	Q8NDQ6	660 aa		13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	NRG4	Q8WWG1	115 aa		13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	REEP6	Q96HR9	211 aa		13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	SLC22A4	Q9H015	551 aa		13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	SAP30L	Q9HAJ7	183 aa		13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	ZNF391	Q9UJN7	358 aa		13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	EXOG	Q9Y2C4	368 aa	Known RBP	13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	RRP15	Q9Y3B9	282 aa	Known RBP	13.62	□□□□□ -0.23
RAB40C-208	ENST00000564703	ZSCAN5B	A6NJL1	495 aa		13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	LOC110117498-PIK3R3	F6TDL0	507 aa		13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	NDUFS8	O00217	210 aa		13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	MAGEB4	O15481	346 aa	Predicted RBP	13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	RRP9	O43818	475 aa	Known RBP	13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	RPP14	O95059	124 aa	Known RBP	13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	HPX	P02790	462 aa		13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	ADH4	P08319	380 aa		13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	TNFRSF1A	P19438	455 aa		13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	ISL1	P61371	349 aa		13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	MRPS11	P82912	194 aa	Known RBP	13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	PRSS45	Q7RTY3	260 aa		13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	COMMD2	Q86X83	199 aa		13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	KRTAP1-3	Q8IUG1	177 aa		13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	CNIH3	Q8TBE1	160 aa		13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	TFAP2C	Q92754	450 aa		13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	SPSB4	Q96A44	273 aa		13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	LGALS12	Q96DT0	336 aa		13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	ELMOD3	Q96FG2	381 aa		13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	PIMREG	Q9BSJ6	248 aa		13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	DLL4	Q9NR61	685 aa		13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	GNG8	Q9UK08	70 aa		13.61	□□□□□ -0.23
RAB40C-208	ENST00000564703	ANKRD30BL	A7E2S9	258 aa		13.6	□□□□□ -0.23

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