RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 E9PQ18 207 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 F5H5K5 113 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 NDUFB3O43676 98 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 GMDSO60547 372 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 SLC16A7O60669 478 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 SNNO75324 88 aaPredicted RBP5.97□□□□□ -1.45
VPS4A-203ENST00000564399 KHDRBS3O75525 346 aaKnown RBP5.97□□□□□ -1.45
VPS4A-203ENST00000564399 LCATP04180 440 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 DUX4L2P0CJ85 424 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 DUX4L3P0CJ86 424 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 DUX4L4P0CJ87 422 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 DUX4L5P0CJ88 424 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 DUX4L6P0CJ89 424 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 DUX4L7P0CJ90 424 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 PF4V1P10720 104 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 ZNF26P17031 533 aaPredicted RBP5.97□□□□□ -1.45
VPS4A-203ENST00000564399 TNFRSF1BP20333 461 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 UBE2E1P51965 193 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 MTPNP58546 118 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 ACSM1Q08AH1 577 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 IKZF1Q13422 519 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 HABP2Q14520 560 aaPredicted RBP5.97□□□□□ -1.45
VPS4A-203ENST00000564399 MICBQ29980 383 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 LRRC75BQ2VPJ9 315 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 AGKQ53H12 422 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 ARSJQ5FYB0 599 aaPredicted RBP5.97□□□□□ -1.45
VPS4A-203ENST00000564399 NCR3LG1Q68D85 454 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 DUX4L9Q6RFH8 374 aaPredicted RBP5.97□□□□□ -1.45
VPS4A-203ENST00000564399 SLC36A1Q7Z2H8 476 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 OAFQ86UD1 273 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 GLB1L2Q8IW92 636 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 GCSAMQ8N6F7 178 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 Q8N7P7 452 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 PLPP7Q8NBV4 271 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 LY6G5BQ8NDX9 201 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 WFDC9Q8NEX5 89 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 GJC3Q8NFK1 279 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 C17orf50Q8WW18 174 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 H1FXQ92522 213 aaKnown RBP5.97□□□□□ -1.45
VPS4A-203ENST00000564399 ZBTB9Q96C00 473 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 Q96M85 177 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 DMRTB1Q96MA1 342 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 OR5M11Q96RB7 305 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 COQ7Q99807 217 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 DCTN5Q9BTE1 182 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 ADAT1Q9BUB4 502 aaKnown RBP5.97□□□□□ -1.45
VPS4A-203ENST00000564399 TMEM109Q9BVC6 243 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 POLR2J2Q9GZM3 115 aaKnown RBP5.97□□□□□ -1.45
VPS4A-203ENST00000564399 HDHD2Q9H0R4 259 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 POLR2J3Q9H1A7 115 aaKnown RBP5.97□□□□□ -1.45
VPS4A-203ENST00000564399 DUX4Q9UBX2 424 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 ADAM18Q9Y3Q7 739 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 STAB2Q8WWQ8 2551 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.96□□□□□ -1.46
VPS4A-203ENST00000564399 HTR3EA5X5Y0 456 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 GGT3PA6NGU5 568 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 CD300LBA8K4G0 201 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 ADARB2-AS1A8MUL3 147 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 EFCAB9A8MZ26 197 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 POLR3GO15318 223 aaPredicted RBP5.96□□□□□ -1.46
VPS4A-203ENST00000564399 AHCYL1O43865 530 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 PF4P02776 101 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 CD14P08571 375 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 FAHP16930 419 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 POU1F1P28069 291 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 IFNA8P32881 189 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 GGT2P36268 569 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 OR1E2P47887 323 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 SLC9A3P48764 834 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 KRTAP10-11P60412 298 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 SLC35A2P78381 396 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 ELF3P78545 371 aaPredicted RBP5.96□□□□□ -1.46
VPS4A-203ENST00000564399 COL10A1Q03692 680 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 MZT1Q08AG7 82 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 BLMHQ13867 455 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 SELPLGQ14242 412 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 ANKDD1AQ495B1 522 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 LRRC10Q5BKY1 277 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 MESTQ5EB52 335 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 WDR38Q5JTN6 314 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 TEX36Q5VZQ5 186 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 CORO6Q6QEF8 472 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 DLEU7Q6UYE1 221 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 COLCA1Q6ZS62 124 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 DHDDSQ86SQ9 333 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 NRMQ8IXM6 262 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 LNX2Q8N448 690 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 FAM216BQ8N7L0 139 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 PAPD5Q8NDF8 572 aaKnown RBP5.96□□□□□ -1.46
VPS4A-203ENST00000564399 OR13C2Q8NGS9 318 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 OR10A6Q8NH74 314 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 LRRC29Q8WV35 223 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 ACOT11Q8WXI4 607 aaPredicted RBP5.96□□□□□ -1.46
VPS4A-203ENST00000564399 TNFRSF14Q92956 283 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 ZNF570Q96NI8 536 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 CGREF1Q99674 301 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 SYT4Q9H2B2 425 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 BAG5Q9UL15 447 aa5.96□□□□□ -1.46
VPS4A-203ENST00000564399 PRPF19Q9UMS4 504 aaKnown RBP5.96□□□□□ -1.46
VPS4A-203ENST00000564399 SF3B6Q9Y3B4 125 aaKnown RBP5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms