RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 RNF7Q9UBF6 113 aa14□□□□□ -0.17
CLN3-211ENST00000564091 CYB5R1Q9UHQ9 305 aa14□□□□□ -0.17
CLN3-211ENST00000564091 V9GYQ6 96 aa14□□□□□ -0.17
CLN3-211ENST00000564091 OR6C68A6NDL8 312 aa13.99□□□□□ -0.17
CLN3-211ENST00000564091 CD300LBA8K4G0 201 aa13.99□□□□□ -0.17
CLN3-211ENST00000564091 ARPC3O15145 178 aa13.99□□□□□ -0.17
CLN3-211ENST00000564091 MELTFP08582 738 aa13.99□□□□□ -0.17
CLN3-211ENST00000564091 SLC6A6P31641 620 aa13.99□□□□□ -0.17
CLN3-211ENST00000564091 BPIFB3P59826 476 aa13.99□□□□□ -0.17
CLN3-211ENST00000564091 PSME3P61289 254 aa13.99□□□□□ -0.17
CLN3-211ENST00000564091 KRT72Q14CN4 511 aa13.99□□□□□ -0.17
CLN3-211ENST00000564091 SLC36A3Q495N2 470 aa13.99□□□□□ -0.17
CLN3-211ENST00000564091 ZNF362Q5T0B9 420 aaPredicted RBP13.99□□□□□ -0.17
CLN3-211ENST00000564091 HACD2Q6Y1H2 254 aa13.99□□□□□ -0.17
CLN3-211ENST00000564091 ZBTB46Q86UZ6 589 aa13.99□□□□□ -0.17
CLN3-211ENST00000564091 SDR9C7Q8NEX9 313 aa13.99□□□□□ -0.17
CLN3-211ENST00000564091 MAP6Q96JE9 813 aa13.99□□□□□ -0.17
CLN3-211ENST00000564091 FN3KRPQ9HA64 309 aa13.99□□□□□ -0.17
CLN3-211ENST00000564091 DCAF13Q9NV06 445 aaKnown RBP13.99□□□□□ -0.17
CLN3-211ENST00000564091 MRPL22Q9NWU5 206 aaKnown RBP13.99□□□□□ -0.17
CLN3-211ENST00000564091 ERVK-18Q9QC07 812 aa13.99□□□□□ -0.17
CLN3-211ENST00000564091 ABCD2Q9UBJ2 740 aa13.99□□□□□ -0.17
CLN3-211ENST00000564091 CENPVL3A0A0U1RRI6 287 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 A0A1B0GUS0 222 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 C5orf63A6NC05 138 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 ZNF879B4DU55 563 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 LGALS8O00214 317 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 NDUFAB1O14561 156 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 ADAM20O43506 726 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 CCDC22O60826 627 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 TOX4O94842 621 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 MMP9P14780 707 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 NOS3P29474 1203 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 RPS27P42677 84 aaKnown RBP13.98□□□□□ -0.17
CLN3-211ENST00000564091 NPY4RP50391 375 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 TPTEP56180 551 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 ZNF92Q03936 586 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 OR8B8Q15620 311 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 SNAI3Q3KNW1 292 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 SLC35F1Q5T1Q4 408 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 CD276Q5ZPR3 534 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 OLFML2AQ68BL7 652 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 RNF148Q8N7C7 305 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 OR2AE1Q8NHA4 323 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 ADAT1Q9BUB4 502 aaKnown RBP13.98□□□□□ -0.17
CLN3-211ENST00000564091 NSRP1Q9H0G5 558 aaKnown RBP13.98□□□□□ -0.17
CLN3-211ENST00000564091 SMURF1Q9HCE7 757 aa13.98□□□□□ -0.17
CLN3-211ENST00000564091 SAMD4AQ9UPU9 718 aaKnown RBP13.98□□□□□ -0.17
CLN3-211ENST00000564091 CLPSL1A2RUU4 121 aa13.97□□□□□ -0.17
CLN3-211ENST00000564091 M0R135 149 aa13.97□□□□□ -0.17
CLN3-211ENST00000564091 P2RY10O00398 339 aa13.97□□□□□ -0.17
CLN3-211ENST00000564091 TNFRSF13BO14836 293 aaPredicted RBP13.97□□□□□ -0.17
CLN3-211ENST00000564091 OR10H3O60404 316 aa13.97□□□□□ -0.17
CLN3-211ENST00000564091 KRTAP10-3P60369 221 aa13.97□□□□□ -0.17
CLN3-211ENST00000564091 SPIBQ01892 262 aa13.97□□□□□ -0.17
CLN3-211ENST00000564091 POU4F2Q12837 409 aa13.97□□□□□ -0.17
CLN3-211ENST00000564091 KCNJ8Q15842 424 aa13.97□□□□□ -0.17
CLN3-211ENST00000564091 ZNF826PQ6ZT77 177 aa13.97□□□□□ -0.17
CLN3-211ENST00000564091 TMEM86BQ8N661 226 aa13.97□□□□□ -0.17
CLN3-211ENST00000564091 GATAD2BQ8WXI9 593 aa13.97□□□□□ -0.17
CLN3-211ENST00000564091 SPTSSAQ969W0 71 aa13.97□□□□□ -0.17
CLN3-211ENST00000564091 ZNF799Q96GE5 643 aa13.97□□□□□ -0.17
CLN3-211ENST00000564091 FAM71F1Q96KD3 344 aaPredicted RBP13.97□□□□□ -0.17
CLN3-211ENST00000564091 WDFY2Q96P53 400 aa13.97□□□□□ -0.17
CLN3-211ENST00000564091 C1orf123Q9NWV4 160 aa13.97□□□□□ -0.17
CLN3-211ENST00000564091 KIF17Q9P2E2 1029 aa13.97□□□□□ -0.17
CLN3-211ENST00000564091 WNK1Q9H4A3 2382 aa13.97□□□□□ -0.17
CLN3-211ENST00000564091 GGT3PA6NGU5 568 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 TVP23AA6NH52 213 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 NDUFA7O95182 113 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 GADD45GO95257 159 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 PTBP3O95758 552 aaKnown RBP13.96□□□□□ -0.17
CLN3-211ENST00000564091 GYPAP02724 150 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 LIPFP07098 398 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 GRPP07492 148 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 ZNF823P16415 610 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 PYCR1P32322 319 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 GLYATL3Q5SZD4 288 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 BRICD5Q6PL45 260 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 PDZD9Q8IXQ8 264 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 LNX2Q8N448 690 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 ZNRF4Q8WWF5 429 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 LHX4Q969G2 390 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 CCT8L2Q96SF2 557 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 CITED1Q99966 193 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 SLC22A4Q9H015 551 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 ACOXLQ9NUZ1 547 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 ADA2Q9NZK5 511 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 N6AMT1Q9Y5N5 214 aa13.96□□□□□ -0.17
CLN3-211ENST00000564091 TRAV38-1A0A0B4J264 116 aa13.95□□□□□ -0.18
CLN3-211ENST00000564091 OOEPA6NGQ2 149 aa13.95□□□□□ -0.18
CLN3-211ENST00000564091 GMDSO60547 372 aa13.95□□□□□ -0.18
CLN3-211ENST00000564091 GMNNO75496 209 aa13.95□□□□□ -0.18
CLN3-211ENST00000564091 FCN3O75636 299 aa13.95□□□□□ -0.18
CLN3-211ENST00000564091 PSKH1P11801 424 aa13.95□□□□□ -0.18
CLN3-211ENST00000564091 SMIM11AP58511 58 aa13.95□□□□□ -0.18
CLN3-211ENST00000564091 ARF6P62330 175 aa13.95□□□□□ -0.18
CLN3-211ENST00000564091 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.95□□□□□ -0.18
CLN3-211ENST00000564091 METTL11BQ5VVY1 283 aa13.95□□□□□ -0.18
CLN3-211ENST00000564091 LYPD4Q6UWN0 246 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms