RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 MPPED2Q15777 294 aa15.85■□□□□ 0.13
VPS35-202ENST00000561713 ZNF404Q494X3 552 aa15.85■□□□□ 0.13
VPS35-202ENST00000561713 LYPD2Q6UXB3 125 aa15.85■□□□□ 0.13
VPS35-202ENST00000561713 PARP8Q8N3A8 854 aa15.85■□□□□ 0.13
VPS35-202ENST00000561713 BOLLQ8N9W6 283 aaKnown RBP15.85■□□□□ 0.13
VPS35-202ENST00000561713 COMMD3-BMI1R4GMX3 469 aa15.85■□□□□ 0.13
VPS35-202ENST00000561713 IGHV2-70DA0A0C4DH43 119 aa15.84■□□□□ 0.13
VPS35-202ENST00000561713 CLDN34H7C241 214 aa15.84■□□□□ 0.13
VPS35-202ENST00000561713 TNFRSF11BO00300 401 aa15.84■□□□□ 0.13
VPS35-202ENST00000561713 SLC2A1P11166 492 aa15.84■□□□□ 0.13
VPS35-202ENST00000561713 CA6P23280 308 aa15.84■□□□□ 0.13
VPS35-202ENST00000561713 PITPNBP48739 271 aa15.84■□□□□ 0.13
VPS35-202ENST00000561713 C16orf89Q6UX73 402 aa15.84■□□□□ 0.13
VPS35-202ENST00000561713 PGAP1Q75T13 922 aa15.84■□□□□ 0.13
VPS35-202ENST00000561713 SPATC1Q76KD6 591 aa15.84■□□□□ 0.13
VPS35-202ENST00000561713 LNX2Q8N448 690 aa15.84■□□□□ 0.13
VPS35-202ENST00000561713 SLC37A3Q8NCC5 494 aa15.84■□□□□ 0.13
VPS35-202ENST00000561713 OR4C15Q8NGM1 316 aa15.84■□□□□ 0.13
VPS35-202ENST00000561713 SPRYD4Q8WW59 207 aaPredicted RBP15.84■□□□□ 0.13
VPS35-202ENST00000561713 NEIL1Q96FI4 390 aaPredicted RBP15.84■□□□□ 0.13
VPS35-202ENST00000561713 ADAT1Q9BUB4 502 aaKnown RBP15.84■□□□□ 0.13
VPS35-202ENST00000561713 MS4A7Q9GZW8 240 aaPredicted RBP15.84■□□□□ 0.13
VPS35-202ENST00000561713 SLITRK2Q9H156 845 aa15.84■□□□□ 0.13
VPS35-202ENST00000561713 N6AMT1Q9Y5N5 214 aa15.84■□□□□ 0.13
VPS35-202ENST00000561713 A0A1B0GWJ7 208 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 LRRC30A6NM36 301 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 IFNL4K9M1U5 179 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 IDH3BO43837 385 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 SPARCP09486 303 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 CLUP10909 449 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 ZNF823P16415 610 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 OMGP23515 440 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 RAD23AP54725 363 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 TPTEP56180 551 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 ZNF92Q03936 586 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 PAX8Q06710 450 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 ECH1Q13011 328 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 MALLQ13021 153 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 CRMP1Q14194 572 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 GLYATL3Q5SZD4 288 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 AQP11Q8NBQ7 271 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 OR8B3Q8NGG8 313 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 OR4Q3Q8NH05 313 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 DACT3Q96B18 629 aaPredicted RBP15.83■□□□□ 0.12
VPS35-202ENST00000561713 OR8B2Q96RD0 313 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 COPS4Q9BT78 406 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 MMADHCQ9H3L0 296 aaPredicted RBP15.83■□□□□ 0.12
VPS35-202ENST00000561713 ARMC1Q9NVT9 282 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 MIOXQ9UGB7 285 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 ARL2BPQ9Y2Y0 163 aa15.83■□□□□ 0.12
VPS35-202ENST00000561713 CD300LBA8K4G0 201 aa15.82■□□□□ 0.12
VPS35-202ENST00000561713 C22orf46C9J442 243 aa15.82■□□□□ 0.12
VPS35-202ENST00000561713 IRF2P14316 349 aa15.82■□□□□ 0.12
VPS35-202ENST00000561713 CD200P41217 278 aa15.82■□□□□ 0.12
VPS35-202ENST00000561713 PRKXP51817 358 aa15.82■□□□□ 0.12
VPS35-202ENST00000561713 SRSF4Q08170 494 aaKnown RBP15.82■□□□□ 0.12
VPS35-202ENST00000561713 OR8G1Q15617 311 aa15.82■□□□□ 0.12
VPS35-202ENST00000561713 ZNF181Q2M3W8 571 aa15.82■□□□□ 0.12
VPS35-202ENST00000561713 ZNF770Q6IQ21 691 aaPredicted RBP15.82■□□□□ 0.12
VPS35-202ENST00000561713 BTNL3Q6UXE8 466 aa15.82■□□□□ 0.12
VPS35-202ENST00000561713 DCXRQ7Z4W1 244 aa15.82■□□□□ 0.12
VPS35-202ENST00000561713 C1orf87Q8N0U7 546 aa15.82■□□□□ 0.12
VPS35-202ENST00000561713 ZNF511Q8NB15 262 aa15.82■□□□□ 0.12
VPS35-202ENST00000561713 OR2T4Q8NH00 348 aa15.82■□□□□ 0.12
VPS35-202ENST00000561713 SPTSSAQ969W0 71 aa15.82■□□□□ 0.12
VPS35-202ENST00000561713 TMIGD2Q96BF3 282 aa15.82■□□□□ 0.12
VPS35-202ENST00000561713 DDOQ99489 341 aa15.82■□□□□ 0.12
VPS35-202ENST00000561713 U3KQV3 271 aa15.82■□□□□ 0.12
VPS35-202ENST00000561713 A0A0G2JK05 382 aa15.81■□□□□ 0.12
VPS35-202ENST00000561713 TCRBV5S2A0A599 114 aa15.81■□□□□ 0.12
VPS35-202ENST00000561713 CCNB2O95067 398 aa15.81■□□□□ 0.12
VPS35-202ENST00000561713 GASTP01350 101 aa15.81■□□□□ 0.12
VPS35-202ENST00000561713 GATA4P43694 442 aa15.81■□□□□ 0.12
VPS35-202ENST00000561713 ZNF362Q5T0B9 420 aaPredicted RBP15.81■□□□□ 0.12
VPS35-202ENST00000561713 SFRP4Q6FHJ7 346 aaPredicted RBP15.81■□□□□ 0.12
VPS35-202ENST00000561713 BRD3OSQ6XYD6 125 aa15.81■□□□□ 0.12
VPS35-202ENST00000561713 NLRC3Q7RTR2 1065 aa15.81■□□□□ 0.12
VPS35-202ENST00000561713 OR56B2PQ8NGI1 322 aa15.81■□□□□ 0.12
VPS35-202ENST00000561713 OR6K6Q8NGW6 343 aa15.81■□□□□ 0.12
VPS35-202ENST00000561713 OR11L1Q8NGX0 322 aa15.81■□□□□ 0.12
VPS35-202ENST00000561713 TSSK6Q9BXA6 273 aa15.81■□□□□ 0.12
VPS35-202ENST00000561713 CTSZQ9UBR2 303 aa15.81■□□□□ 0.12
VPS35-202ENST00000561713 CLN8Q9UBY8 286 aa15.81■□□□□ 0.12
VPS35-202ENST00000561713 KCNG2Q9UJ96 466 aa15.81■□□□□ 0.12
VPS35-202ENST00000561713 GGT3PA6NGU5 568 aa15.8■□□□□ 0.12
VPS35-202ENST00000561713 C3orf80F5H4A9 247 aa15.8■□□□□ 0.12
VPS35-202ENST00000561713 DCTN3O75935 186 aa15.8■□□□□ 0.12
VPS35-202ENST00000561713 MAGEA2P43356 314 aa15.8■□□□□ 0.12
VPS35-202ENST00000561713 MTNR1AP48039 350 aa15.8■□□□□ 0.12
VPS35-202ENST00000561713 WDR25Q64LD2 544 aaPredicted RBP15.8■□□□□ 0.12
VPS35-202ENST00000561713 RPL13AP3Q6NVV1 102 aa15.8■□□□□ 0.12
VPS35-202ENST00000561713 ZNF826PQ6ZT77 177 aa15.8■□□□□ 0.12
VPS35-202ENST00000561713 C9orf139Q6ZV77 190 aa15.8■□□□□ 0.12
VPS35-202ENST00000561713 PIGWQ7Z7B1 504 aa15.8■□□□□ 0.12
VPS35-202ENST00000561713 IQCF1Q8N6M8 205 aa15.8■□□□□ 0.12
VPS35-202ENST00000561713 Q8TCH9 128 aa15.8■□□□□ 0.12
VPS35-202ENST00000561713 RAB40AQ8WXH6 277 aa15.8■□□□□ 0.12
VPS35-202ENST00000561713 UPRTQ96BW1 309 aa15.8■□□□□ 0.12
VPS35-202ENST00000561713 SLAMF6Q96DU3 332 aa15.8■□□□□ 0.12
VPS35-202ENST00000561713 PLEKHA8Q96JA3 519 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms