RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 OR8G1Q15617 311 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 TAF9Q16594 264 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 EMC4Q5J8M3 183 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF770Q6IQ21 691 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-209ENST00000560637 SLC25A26Q70HW3 274 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 MKXQ8IYA7 352 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 ARMC10Q8N2F6 343 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 RBMXL3Q8N7X1 1067 aaKnown RBP4.79□□□□□ -1.64
VPS13C-209ENST00000560637 SEMA6DQ8NFY4 1073 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 CCDC107Q8WV48 283 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 S100A16Q96FQ6 103 aaKnown RBP4.79□□□□□ -1.64
VPS13C-209ENST00000560637 DERL3Q96Q80 235 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 SLC6A7Q99884 636 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 TXNL4BQ9NX01 149 aaKnown RBP4.79□□□□□ -1.64
VPS13C-209ENST00000560637 KCNS2Q9ULS6 477 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 CEP192Q8TEP8 1941 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 TRAV6A0A075B6T7 132 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 ATP6V1G2-DDX39BF2Z307 99 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 PTP4A3O75365 173 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 GPX5O75715 221 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 NGFP01138 241 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 SERPINA5P05154 406 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 UCHL1P09936 223 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 PSKH1P11801 424 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 NDUFB7P17568 137 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 HLA-DMAP28067 261 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 OPRM1P35372 400 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 THBS2P35442 1172 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 PTGDSP41222 190 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 LIMS1P48059 325 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 PSMD7P51665 324 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 MFGE8Q08431 387 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-209ENST00000560637 RIPPLY1Q0D2K3 151 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 MLLT11Q13015 90 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-209ENST00000560637 AQP6Q13520 282 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 PPA1Q15181 289 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 Q499Y3 187 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 RGS7BPQ6MZT1 257 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-209ENST00000560637 LYPD8Q6UX82 237 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 BEND4Q6ZU67 534 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 NANOGP1Q8N7R0 232 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 ZBTB8BQ8NAP8 495 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-209ENST00000560637 CASTOR1Q8WTX7 329 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 OR2J1Q9GZK6 312 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 PLEKHJ1Q9NW61 149 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 V9GY05 133 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 MAP1AP78559 2803 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-209ENST00000560637 KIAA2026Q5HYC2 2103 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 A0A1W2PRD5 423 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 A0A1W2PRF3 423 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 A0A1W2PRM7 423 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 UBE2QL1A1L167 161 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 CLDN25C9JDP6 229 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 TRAPPC2LH3BP13 241 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 DXOO77932 396 aaKnown RBP4.78□□□□□ -1.64
VPS13C-209ENST00000560637 HNRNPCP07910 306 aaKnown RBP eCLIP4.78□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF35P13682 527 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 CD53P19397 219 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 TNFSF4P23510 183 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 MPGP29372 298 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 UQCRFS1P47985 274 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 LHX2P50458 406 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 PLAURQ03405 335 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 FOXO1Q12778 655 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 DCTN2Q13561 401 aaKnown RBP4.78□□□□□ -1.64
VPS13C-209ENST00000560637 KRTCAP3Q53RY4 240 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 SLC35D3Q5M8T2 416 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 LGALS14Q8TCE9 139 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 S100PBPQ96BU1 408 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 CMBLQ96DG6 245 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 GMPPAQ96IJ6 420 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-209ENST00000560637 DMRTB1Q96MA1 342 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 OR8B4Q96RC9 309 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 PSD2Q9BQI7 771 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 FAM234AQ9H0X4 552 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 DUSP21Q9H596 190 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 SP140LQ9H930 580 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF629Q9UEG4 869 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-209ENST00000560637 MRM2Q9UI43 246 aaKnown RBP4.78□□□□□ -1.64
VPS13C-209ENST00000560637 RCE1Q9Y256 329 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 PEX16Q9Y5Y5 336 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 TMEM212A6NML5 194 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 SSNA1O43805 119 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 GATBO75879 557 aaKnown RBP4.78□□□□□ -1.64
VPS13C-209ENST00000560637 CELA3BP08861 270 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 SMIM18P0DKX4 95 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 GTF2F2P13984 249 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 RPA2P15927 270 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 ALOX5APP20292 161 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 ATP1B3P54709 279 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 CLDN18P56856 261 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 ERVS71-1P61550 626 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF718Q3SXZ3 478 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 CDNFQ49AH0 187 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 PHYHD1Q5SRE7 291 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 GLIPR1L1Q6UWM5 242 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 TMEM108Q6UXF1 575 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 PRSS45Q7RTY3 260 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 TMEM185AQ8NFB2 350 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 SYNPRQ8TBG9 265 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms