RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 SNAPC5O75971 98 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 ZNF735P0CB33 412 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 PTAFRP25105 342 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 HHEXQ03014 270 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 IAH1Q2TAA2 248 aaPredicted RBP10.14□□□□□ -0.79
LDLR-208ENST00000558518 GAB4Q2WGN9 574 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 P4HA3Q7Z4N8 544 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 PNLDC1Q8NA58 520 aaKnown RBP10.14□□□□□ -0.79
LDLR-208ENST00000558518 OR5H2Q8NGV7 314 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 OR51E1Q8TCB6 317 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 LYRM4Q9HD34 91 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 SMCO4Q9NRQ5 59 aa10.14□□□□□ -0.79
LDLR-208ENST00000558518 MRPL22Q9NWU5 206 aaKnown RBP10.14□□□□□ -0.79
LDLR-208ENST00000558518 IGHV3-20A0A0C4DH32 117 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 PRSS37A4D1T9 235 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 NPIPA5E9PKD4 350 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 H7C1Q1 480 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 EFSO43281 561 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 TXNDC12O95881 172 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 ADH1BP00325 375 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 PNMTP11086 282 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 GP1BBP13224 206 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 OMGP23515 440 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 GLO1Q04760 184 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 EEF1A1P5Q5VTE0 462 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 GLIPR1L1Q6UWM5 242 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 Q6ZSR6 202 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 SLC25A42Q86VD7 318 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 BAHD1Q8TBE0 780 aaPredicted RBP10.13□□□□□ -0.79
LDLR-208ENST00000558518 TGM7Q96PF1 710 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 NPIPA1Q9UND3 350 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 VPS13AQ96RL7 3174 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 NSA2O95478 260 aaKnown RBP10.13□□□□□ -0.79
LDLR-208ENST00000558518 HSD11B1P28845 292 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 NDUFA6P56556 154 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 INSM1Q01101 510 aaPredicted RBP10.13□□□□□ -0.79
LDLR-208ENST00000558518 RIPPLY1Q0D2K3 151 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 HABP2Q14520 560 aaPredicted RBP10.13□□□□□ -0.79
LDLR-208ENST00000558518 AWAT1Q58HT5 328 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 DHRS11Q6UWP2 260 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 CLEC18BQ6UXF7 455 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 ZNF565Q8N9K5 539 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 SLC26A10Q8NG04 563 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 MFSD8Q8NHS3 518 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 MITD1Q8WV92 249 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 REEP6Q96HR9 211 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 KIRREL1Q96J84 757 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 FAM221AA4D161 298 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 OR5K4A6NMS3 321 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 SERPINA2P20848 420 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 SLC6A9P48067 706 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 CAMLGP49069 296 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 MICBQ29980 383 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 MAMDC2Q7Z304 686 aaPredicted RBP10.13□□□□□ -0.79
LDLR-208ENST00000558518 ATG4DQ86TL0 474 aaPredicted RBP10.13□□□□□ -0.79
LDLR-208ENST00000558518 APCDD1LQ8NCL9 501 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 ZNF700Q9H0M5 742 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 MMP26Q9NRE1 261 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 LPAR3Q9UBY5 353 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 THSD7BQ9C0I4 1608 aa10.13□□□□□ -0.79
LDLR-208ENST00000558518 A0A0J9YY10 115 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 CXorf51AA0A1B0GTR3 108 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 ADAM10O14672 748 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 ATXN7O15265 892 aaPredicted RBP10.12□□□□□ -0.79
LDLR-208ENST00000558518 CD8AP01732 235 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 BCKDHBP21953 392 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 CDAP32320 146 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 ZNF93P35789 620 aaPredicted RBP10.12□□□□□ -0.79
LDLR-208ENST00000558518 ACY1Q03154 408 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 ZNF117Q03924 483 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 TLE1Q04724 770 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 EGR3Q06889 387 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 SKP2Q13309 424 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 HNF4GQ14541 408 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 ACER2Q5QJU3 275 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 BRICD5Q6PL45 260 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 UQCC3Q6UW78 93 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 RAB3CQ96E17 227 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 ADAT3Q96EY9 351 aaPredicted RBP10.12□□□□□ -0.79
LDLR-208ENST00000558518 RHOVQ96L33 236 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 RNF126Q9BV68 326 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 DOCK8Q8NF50 2099 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 PRTGQ2VWP7 1150 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 MIDNQ504T8 468 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 DHRS7BQ6IAN0 325 aaPredicted RBP10.12□□□□□ -0.79
LDLR-208ENST00000558518 RNF128Q8TEB7 428 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 CDC6Q99741 560 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 LMF2Q9BU23 707 aaKnown RBP10.12□□□□□ -0.79
LDLR-208ENST00000558518 TGIF2Q9GZN2 237 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 TBX21Q9UL17 535 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 A0A1B0GTI1 187 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 K7EPK0 472 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 RAB27BO00194 218 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 AHSA1O95433 338 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 VSIG8P0DPA2 414 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 GABRR1P24046 479 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 RBMXP38159 391 aaKnown RBP10.12□□□□□ -0.79
LDLR-208ENST00000558518 RGS19P49795 217 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 ALG11Q2TAA5 492 aa10.12□□□□□ -0.79
LDLR-208ENST00000558518 ANKRD55Q3KP44 614 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms