RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 ZNF319Q9P2F9 582 aa8.29□□□□□ -1.08
CUX1-216ENST00000558469 NUFIP1Q9UHK0 495 aaKnown RBP8.29□□□□□ -1.08
CUX1-216ENST00000558469 POU2F3Q9UKI9 436 aa8.29□□□□□ -1.08
CUX1-216ENST00000558469 SLC22A13Q9Y226 551 aa8.29□□□□□ -1.08
CUX1-216ENST00000558469 STARD10Q9Y365 291 aa8.29□□□□□ -1.08
CUX1-216ENST00000558469 RNF115Q9Y4L5 304 aa8.29□□□□□ -1.08
CUX1-216ENST00000558469 SIRT4Q9Y6E7 314 aaPredicted RBP8.29□□□□□ -1.08
CUX1-216ENST00000558469 ATP23Q9Y6H3 246 aa8.29□□□□□ -1.08
CUX1-216ENST00000558469 PKDREJQ9NTG1 2253 aa8.29□□□□□ -1.08
CUX1-216ENST00000558469 LRBAP50851 2863 aa8.29□□□□□ -1.08
CUX1-216ENST00000558469 PLCE1Q9P212 2302 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 TRIM64CA6NLI5 447 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 A6NNC1 897 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 SHISA9B4DS77 424 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 OGG1O15527 345 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 ICMTO60725 284 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 INMTO95050 263 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 ATE1O95260 518 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 CLPTM1O96005 669 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 PLAUP00749 431 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 TTRP02766 147 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 COX6B1P14854 86 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 CELP19835 753 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 COL8A1P27658 744 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 PSMB9P28065 219 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 LOXP28300 417 aaPredicted RBP8.28□□□□□ -1.08
CUX1-216ENST00000558469 CCR9P51686 369 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 TAS2R43P59537 309 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 ERVS71-1P61550 626 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 PPP1CBP62140 327 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 BDH1Q02338 343 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 SLC3A1Q07837 685 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 ACSM1Q08AH1 577 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 MALLQ13021 153 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 SNTB2Q13425 540 aaKnown RBP8.28□□□□□ -1.08
CUX1-216ENST00000558469 HLXQ14774 488 aaPredicted RBP8.28□□□□□ -1.08
CUX1-216ENST00000558469 DAZAP2Q15038 168 aaPredicted RBP8.28□□□□□ -1.08
CUX1-216ENST00000558469 CDK5R1Q15078 307 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 TIGD6Q17RP2 521 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 ARMCX4Q5H9R4 360 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 GLYATL3Q5SZD4 288 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 SPATA46Q5T0L3 261 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 UNQ6126/PRO20091Q6UXV3 157 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 COLCA1Q6ZS62 124 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 COMMD2Q86X83 199 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 ELMOD2Q8IZ81 293 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 ZNF676Q8N7Q3 588 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 KBTBD8Q8NFY9 601 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 OR5AK2Q8NH90 309 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 OR2AE1Q8NHA4 323 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 OR51E1Q8TCB6 317 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 SGK3Q96BR1 496 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 COG8Q96MW5 612 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 PDCD1LG2Q9BQ51 273 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 OR2J1Q9GZK6 312 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 POFUT1Q9H488 388 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 ISYNA1Q9NPH2 558 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 PTTG3PQ9NZH4 202 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 KCNN3Q9UGI6 736 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 ST6GALNAC2Q9UJ37 374 aa8.28□□□□□ -1.08
CUX1-216ENST00000558469 SPTAN1Q13813 2472 aaKnown RBP8.28□□□□□ -1.08
CUX1-216ENST00000558469 USP9YO00507 2555 aaPredicted RBP8.27□□□□□ -1.08
CUX1-216ENST00000558469 CRYBG3Q68DQ2 2970 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 A0A0U1RQV5 110 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 OR4C45A6NMZ5 311 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 H3BSH0 61 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 J3QW42 95 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 P2RY10O00398 339 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 XRCC2O43543 280 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 PLPP2O43688 288 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 GPRIN2O60269 458 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 ZFPL1O95159 310 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 CPEP16870 476 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 THBS4P35443 961 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 NKX6-1P78426 367 aaPredicted RBP8.27□□□□□ -1.09
CUX1-216ENST00000558469 ZNF92Q03936 586 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 MLLT11Q13015 90 aaPredicted RBP8.27□□□□□ -1.09
CUX1-216ENST00000558469 TSTQ16762 297 aaKnown RBP8.27□□□□□ -1.09
CUX1-216ENST00000558469 LIPKQ5VXJ0 399 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 DMKNQ6E0U4 476 aaPredicted RBP8.27□□□□□ -1.09
CUX1-216ENST00000558469 RGS7BPQ6MZT1 257 aaPredicted RBP8.27□□□□□ -1.09
CUX1-216ENST00000558469 VHLLQ6RSH7 139 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 ZNF704Q6ZNC4 412 aaPredicted RBP8.27□□□□□ -1.09
CUX1-216ENST00000558469 C1orf174Q8IYL3 243 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 RDH10Q8IZV5 341 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 NUP37Q8NFH4 326 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 SLC25A40Q8TBP6 338 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 AKAP1Q92667 903 aaKnown RBP eCLIP8.27□□□□□ -1.09
CUX1-216ENST00000558469 GHSRQ92847 366 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 NEUROG1Q92886 237 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 UFD1Q92890 307 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 MUL1Q969V5 352 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 SMIM19Q96E16 107 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 REEP6Q96HR9 211 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 LYZL4Q96KX0 146 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 OPALINQ96PE5 141 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 PSMG3-AS1Q96PY0 264 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 BCL2L14Q9BZR8 327 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 COMMD4Q9H0A8 199 aa8.27□□□□□ -1.09
CUX1-216ENST00000558469 SCOCQ9UIL1 159 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms