RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 INPP5EQ9NRR6 644 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 NEU3Q9UQ49 428 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 CCL26Q9Y258 94 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 TRAPPC4Q9Y296 219 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 HES2Q9Y543 173 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 TMEM131Q92545 1883 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 PRRC2AP48634 2157 aaKnown RBP3.21□□□□□ -1.9
LIMA1-205ENST00000550592 TLN2Q9Y4G6 2542 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 BSNQ9UPA5 3926 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 TDRD6O60522 2096 aaKnown RBP3.2□□□□□ -1.9
LIMA1-205ENST00000550592 RP1P56715 2156 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 ZNF726A6NNF4 738 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 DLGAP1O14490 977 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 DYNC1I1O14576 645 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 RNF113AO15541 343 aaKnown RBP3.2□□□□□ -1.9
LIMA1-205ENST00000550592 HMMRO75330 724 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 ERLIN1O75477 346 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 WBP4O75554 376 aaKnown RBP3.2□□□□□ -1.9
LIMA1-205ENST00000550592 EIF3GO75821 320 aaKnown RBP eCLIP3.2□□□□□ -1.9
LIMA1-205ENST00000550592 CCNE2O96020 404 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 GP1BAP07359 652 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 CSF3P09919 207 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 IGHV3-43DP0DP04 118 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 RORAP35398 523 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 SLC26A3P40879 764 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 TNFSF9P41273 254 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 RPS10P46783 165 aaKnown RBP3.2□□□□□ -1.9
LIMA1-205ENST00000550592 FGF8P55075 233 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-205ENST00000550592 SRSF6Q13247 344 aaKnown RBP3.2□□□□□ -1.9
LIMA1-205ENST00000550592 AQP6Q13520 282 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 RFX4Q33E94 735 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 XKR7Q5GH72 579 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 TMEM255AQ5JRV8 349 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 NIPA1Q7RTP0 329 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 PEX26Q7Z412 305 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 C6orf120Q7Z4R8 191 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 MS4A15Q8N5U1 240 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 OR7G2Q8NG99 324 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 SLC22A8Q8TCC7 542 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 SGK3Q96BR1 496 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 LRRC58Q96CX6 371 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 FAM210BQ96KR6 192 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 SH3GL3Q99963 347 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 UGT1A7Q9HAW7 530 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 UGT1A10Q9HAW8 530 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 UGT1A8Q9HAW9 530 aa3.2□□□□□ -1.9
LIMA1-205ENST00000550592 SHANK1Q9Y566 2161 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.19□□□□□ -1.9
LIMA1-205ENST00000550592 A0A1B0GVI7 797 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 A0A1W2PNU3 283 aaPredicted RBP3.19□□□□□ -1.9
LIMA1-205ENST00000550592 CTAGE15A4D2H0 777 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 A6NDX4 124 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 FAM166BA8MTA8 275 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 TCP11X1B4DZS4 312 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 H3BNH8 94 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 TPM2P07951 284 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 CCR8P51685 355 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 CRISP3P54108 245 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 RPL10AP62906 217 aaKnown RBP3.19□□□□□ -1.9
LIMA1-205ENST00000550592 ZNF92Q03936 586 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 REG3AQ06141 175 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 ITGB3BPQ13352 177 aaPredicted RBP3.19□□□□□ -1.9
LIMA1-205ENST00000550592 GUCA2BQ16661 112 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 RAET1LQ5VY80 246 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 IGFL2Q6UWQ7 119 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 Q6ZSR3 168 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 H2AFVQ71UI9 128 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 MTERF4Q7Z6M4 381 aaKnown RBP3.19□□□□□ -1.9
LIMA1-205ENST00000550592 CAMK2N1Q7Z7J9 78 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 CTAGE6Q86UF2 777 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 ZNF429Q86V71 674 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 Q8N9W7 124 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 MDS2Q8NDY4 140 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 OR1S2Q8NGQ3 325 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 DTX3LQ8TDB6 740 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 AURKBQ96GD4 344 aaPredicted RBP3.19□□□□□ -1.9
LIMA1-205ENST00000550592 PAIP2Q9BPZ3 127 aaKnown RBP3.19□□□□□ -1.9
LIMA1-205ENST00000550592 ECSITQ9BQ95 431 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 LZTS2Q9BRK4 669 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 CENPKQ9BS16 269 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 RACGAP1Q9H0H5 632 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 LINC00597Q9H2U6 94 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 ZDHHC4Q9NPG8 344 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 CTPS2Q9NRF8 586 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 ZNF226Q9NYT6 803 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 GNPTGQ9UJJ9 305 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 HEBP2Q9Y5Z4 205 aa3.19□□□□□ -1.9
LIMA1-205ENST00000550592 FLNAP21333 2647 aaKnown RBP3.19□□□□□ -1.9
LIMA1-205ENST00000550592 POLEQ07864 2286 aa3.18□□□□□ -1.9
LIMA1-205ENST00000550592 IGKV6-21A0A0C4DH24 114 aa3.18□□□□□ -1.9
LIMA1-205ENST00000550592 IGHV3-64DA0A0J9YX35 117 aa3.18□□□□□ -1.9
LIMA1-205ENST00000550592 KRTAP9-6A8MVA2 160 aa3.18□□□□□ -1.9
LIMA1-205ENST00000550592 I3L4J1 428 aa3.18□□□□□ -1.9
LIMA1-205ENST00000550592 PES1O00541 588 aaKnown RBP3.18□□□□□ -1.9
LIMA1-205ENST00000550592 MRPS12O15235 138 aaKnown RBP3.18□□□□□ -1.9
LIMA1-205ENST00000550592 NVLO15381 856 aaKnown RBP3.18□□□□□ -1.9
LIMA1-205ENST00000550592 RNF13O43567 381 aa3.18□□□□□ -1.9
LIMA1-205ENST00000550592 FGGP02679 453 aa3.18□□□□□ -1.9
LIMA1-205ENST00000550592 PABPC4LP0CB38 370 aaKnown RBP3.18□□□□□ -1.9
LIMA1-205ENST00000550592 PNMA6AP0CW24 399 aaPredicted RBP3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms