RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 SLC48A1Q6P1K1 146 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 Q6ZRG5 221 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 DPPA2Q7Z7J5 298 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 GLYATL2Q8WU03 294 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 SFT2D1Q8WV19 159 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 HSD17B8Q92506 261 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 FGF13Q92913 245 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 LIN37Q96GY3 246 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-203ENST00000547825 CPEB1Q9BZB8 566 aaKnown RBP4.93□□□□□ -1.62
LIMA1-203ENST00000547825 PELI2Q9HAT8 420 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 TAF9BQ9HBM6 251 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 CRLF2Q9HC73 371 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 CHST11Q9NPF2 352 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 IL20Q9NYY1 176 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 HS3ST2Q9Y278 367 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 LOC400499M0QZD8 3231 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 PLCE1Q9P212 2302 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 TRBV5-4A0A0C4DH59 114 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 PPP1R2P9O14990 202 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 DPM1O60762 260 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 SCAF4O95104 1147 aaKnown RBP4.92□□□□□ -1.62
LIMA1-203ENST00000547825 CNOT4O95628 575 aaKnown RBP4.92□□□□□ -1.62
LIMA1-203ENST00000547825 RPA2P15927 270 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 MGMTP16455 207 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 PSMB6P28072 239 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 HOXA6P31267 233 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 TAGLN2P37802 199 aaKnown RBP4.92□□□□□ -1.62
LIMA1-203ENST00000547825 LIMS1P48059 325 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 PPA1Q15181 289 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 HAGHQ16775 308 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 PLEKHN1Q494U1 663 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-203ENST00000547825 TANGO2Q6ICL3 276 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 DNM1P34Q6PK57 102 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 SGPP2Q8IWX5 399 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 LINC00518Q8N0U6 118 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 SLC30A7Q8NEW0 376 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 OR5AN1Q8NGI8 311 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 OR14A16Q8NHC5 309 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 IFI44Q8TCB0 444 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 HAS2Q92819 552 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 PGAM5Q96HS1 289 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 GPR137Q96N19 417 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 OR2M4Q96R27 311 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 SLC25A32Q9H2D1 315 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 CNTD2Q9H8S5 307 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 RHOFQ9HBH0 211 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 PLEKHJ1Q9NW61 149 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 KLRF1Q9NZS2 232 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 NDRG3Q9UGV2 375 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 STEAP1Q9UHE8 339 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 POLEQ07864 2286 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 hCG_1809904A0A1W2PP81 198 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 A0A1W2PR64 198 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 A0A1W2PRV1 198 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 SMCO3A2RU48 225 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 OR6C68A6NDL8 312 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 DIRAS3O95661 229 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 IFNA2P01563 188 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 MALP21145 153 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 SFTPDP35247 375 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 GLP1RP43220 463 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 RAB5CP51148 216 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 GAS1P54826 345 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 MLF1P58340 268 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 RSU1Q15404 277 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 ELAVL1Q15717 326 aaKnown RBP4.92□□□□□ -1.62
LIMA1-203ENST00000547825 ZNF528Q3MIS6 628 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 NR2C2APQ86WQ0 139 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 TMEM105Q8N8V8 129 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 UBAC2Q8NBM4 344 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 OR10D4PQ8NGN7 298 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 RAB3CQ96E17 227 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 ZNF442Q9H7R0 627 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 TAS2R4Q9NYW5 299 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 OR5V1Q9UGF6 321 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 PCDHGA5Q9Y5G8 931 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 UMAD1C9J7I0 102 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 XRCC2O43543 280 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 NUDT21O43809 227 aaKnown RBP4.92□□□□□ -1.62
LIMA1-203ENST00000547825 KLF8O95600 359 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-203ENST00000547825 FGF19O95750 216 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 GPR75O95800 540 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 HOXD4P09016 255 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-203ENST00000547825 GNB3P16520 340 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 HRH1P35367 487 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 RPS15AP62244 130 aaKnown RBP4.92□□□□□ -1.62
LIMA1-203ENST00000547825 PHLDA2Q53GA4 152 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 HTR3DQ70Z44 454 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 OR4N2Q8NGD1 307 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 OR5M9Q8NGP3 310 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 LILRB1Q8NHL6 650 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-203ENST00000547825 SCGB1C1Q8TD33 95 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 APOBEC4Q8WW27 367 aaKnown RBP4.92□□□□□ -1.62
LIMA1-203ENST00000547825 FGF11Q92914 225 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 PTP4A1Q93096 173 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 ARRDC3Q96B67 414 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 TOE1Q96GM8 510 aaKnown RBP4.92□□□□□ -1.62
LIMA1-203ENST00000547825 SLC25A21Q9BQT8 299 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-203ENST00000547825 NELFAQ9H3P2 528 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 C2orf42Q9NWW7 574 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms