RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 OR14J1Q9UGF5 321 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 ST6GALNAC2Q9UJ37 374 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 ANKUB1A6NFN9 424 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 SERPINE2P07093 398 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 SERPINF1P36955 418 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 EFNB2P52799 333 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 KRBOX4Q5JUW0 171 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 PXDC1Q5TGL8 231 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 FBXW12Q6X9E4 464 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 DOK3Q7L591 496 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 MUC20Q8N307 709 aaPredicted RBP14.04□□□□□ -0.16
CUX1-211ENST00000546411 UTP23Q9BRU9 249 aaKnown RBP14.04□□□□□ -0.16
CUX1-211ENST00000546411 C1QTNF6Q9BXI9 259 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 SMIM10L1P0DMW3 83 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 ANKRD37Q7Z713 158 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 OR11H7Q8NGC8 314 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 SMIM10Q96HG1 83 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 OXGR1Q96P68 337 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 DLL4Q9NR61 685 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 MTFP1Q9UDX5 166 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 TCF20Q9UGU0 1960 aaKnown RBP14.03□□□□□ -0.16
CUX1-211ENST00000546411 TMEM272A0A1B0GTI8 110 aa14.03□□□□□ -0.16
CUX1-211ENST00000546411 MED6O75586 246 aa14.03□□□□□ -0.16
CUX1-211ENST00000546411 RPL35P42766 123 aaKnown RBP14.03□□□□□ -0.16
CUX1-211ENST00000546411 MFGE8Q08431 387 aaPredicted RBP14.03□□□□□ -0.16
CUX1-211ENST00000546411 ACSM1Q08AH1 577 aa14.03□□□□□ -0.16
CUX1-211ENST00000546411 ZNF684Q5T5D7 378 aa14.03□□□□□ -0.16
CUX1-211ENST00000546411 PPP1R1CQ8WVI7 109 aa14.03□□□□□ -0.16
CUX1-211ENST00000546411 SDHAF2Q9NX18 166 aa14.03□□□□□ -0.16
CUX1-211ENST00000546411 ZMIZ1Q9ULJ6 1067 aa14.03□□□□□ -0.16
CUX1-211ENST00000546411 H3BMH7 237 aa14.03□□□□□ -0.16
CUX1-211ENST00000546411 K7EPK0 472 aa14.03□□□□□ -0.16
CUX1-211ENST00000546411 GRB2P62993 217 aaKnown RBP14.03□□□□□ -0.16
CUX1-211ENST00000546411 RIPPLY1Q0D2K3 151 aa14.03□□□□□ -0.16
CUX1-211ENST00000546411 EXT1Q16394 746 aa14.03□□□□□ -0.16
CUX1-211ENST00000546411 FAM71E2Q8N5Q1 922 aa14.03□□□□□ -0.16
CUX1-211ENST00000546411 TMED6Q8WW62 240 aa14.03□□□□□ -0.16
CUX1-211ENST00000546411 DNTTIP1Q9H147 329 aa14.03□□□□□ -0.16
CUX1-211ENST00000546411 NDUFB6O95139 128 aa14.03□□□□□ -0.16
CUX1-211ENST00000546411 GLDNQ6ZMI3 551 aaPredicted RBP14.03□□□□□ -0.16
CUX1-211ENST00000546411 RAB11FIP2Q7L804 512 aa14.03□□□□□ -0.16
CUX1-211ENST00000546411 KMT5CQ86Y97 462 aa14.03□□□□□ -0.16
CUX1-211ENST00000546411 SEMA6DQ8NFY4 1073 aa14.03□□□□□ -0.16
CUX1-211ENST00000546411 TTC9Q92623 222 aa14.03□□□□□ -0.16
CUX1-211ENST00000546411 ZNF318Q5VUA4 2279 aa14.03□□□□□ -0.16
CUX1-211ENST00000546411 ANKRD30BLA7E2S9 258 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 PATE3B3GLJ2 98 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 FTCDNL1E5RQL4 147 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 TRAPPC2LH3BP13 241 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 DHHO43323 396 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 ADAM11O75078 769 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 CCL4P13236 92 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 IL11P20809 199 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 PCBD1P61457 104 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 CMTM1Q8IZ96 169 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 DEFB123Q8N688 67 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 HSD17B11Q8NBQ5 300 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 OR5L1Q8NGL2 311 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 OR2AE1Q8NHA4 323 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 SCGB1C1Q8TD33 95 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 FAM86C1Q9NVL1 165 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 ZNF230Q9UIE0 474 aaPredicted RBP14.02□□□□□ -0.16
CUX1-211ENST00000546411 GPR157Q5UAW9 335 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 FIP1L1Q6UN15 594 aaKnown RBP14.02□□□□□ -0.16
CUX1-211ENST00000546411 NAXDQ8IW45 347 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 CNTNAP3BQ96NU0 1288 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 HINT2Q9BX68 163 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 SCPEP1Q9HB40 452 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 OCIAD1Q9NX40 245 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 LRFN1Q9P244 771 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 CSAG2Q9Y5P2 127 aa14.02□□□□□ -0.16
CUX1-211ENST00000546411 ANKRD34CP0C6C1 535 aa14.02□□□□□ -0.17
CUX1-211ENST00000546411 RPS27AP62979 156 aaKnown RBP14.02□□□□□ -0.17
CUX1-211ENST00000546411 UBA52P62987 128 aaKnown RBP14.02□□□□□ -0.17
CUX1-211ENST00000546411 WIPI1Q5MNZ9 446 aaPredicted RBP14.02□□□□□ -0.17
CUX1-211ENST00000546411 ANKRD16Q6P6B7 361 aa14.02□□□□□ -0.17
CUX1-211ENST00000546411 BRICD5Q6PL45 260 aa14.02□□□□□ -0.17
CUX1-211ENST00000546411 OR4D6Q8NGJ1 314 aa14.02□□□□□ -0.17
CUX1-211ENST00000546411 ACACAQ13085 2346 aa14.02□□□□□ -0.17
CUX1-211ENST00000546411 TK1P04183 234 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 LTC4SQ16873 150 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 SFRP5Q5T4F7 317 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 LYPD8Q6UX82 237 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 LRRTM1Q86UE6 522 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 C20orf196Q8IYI0 205 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 CCDC71LQ8N9Z2 235 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 PXT1Q8NFP0 134 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 GLYATL2Q8WU03 294 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 ZNF286AQ9HBT8 521 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 TP53BP1Q12888 1972 aaPredicted RBP14.01□□□□□ -0.17
CUX1-211ENST00000546411 SPRY1O43609 319 aaPredicted RBP14.01□□□□□ -0.17
CUX1-211ENST00000546411 PPT1P50897 306 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 CLINT1Q14677 625 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 FHL5Q5TD97 284 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 CNTD2Q9H8S5 307 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 EMC3Q9P0I2 261 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 PHF1O43189 567 aaPredicted RBP14.01□□□□□ -0.17
CUX1-211ENST00000546411 MGMTP16455 207 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 MGAT2Q10469 447 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 FZD5Q13467 585 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms