RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 COA3Q9Y2R0 106 aaPredicted RBP12.85□□□□□ -0.35
LIMS1-215ENST00000544547 PLXNB2O15031 1838 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 SCN2AQ99250 2005 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 OR2W5A6NFC9 320 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 ECH1Q13011 328 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 ADIRFQ15847 76 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 ETV3LQ6ZN32 361 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 OR56B1Q8NGI3 324 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 OR14L1PQ8NHC6 308 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 PIK3IP1Q96FE7 263 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 C2orf50Q96LR7 162 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 PPIL1Q9Y3C6 166 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 SCN4AP35499 1836 aa12.85□□□□□ -0.35
LIMS1-215ENST00000544547 AHCTF1Q8WYP5 2266 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 H2AFB1P0C5Y9 115 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 OPN5Q6U736 354 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 ZNF547Q8IVP9 402 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 ZNF709Q8N972 641 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 ESRP2Q9H6T0 727 aaKnown RBP12.84□□□□□ -0.35
LIMS1-215ENST00000544547 PRDM7Q9NQW5 492 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 KCNS2Q9ULS6 477 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 DAPP1Q9UN19 280 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 OR2M5A3KFT3 312 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 TAAR5O14804 337 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 ID4P47928 161 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 POU3F1Q03052 451 aaPredicted RBP12.84□□□□□ -0.35
LIMS1-215ENST00000544547 RPL18Q07020 188 aaKnown RBP12.84□□□□□ -0.35
LIMS1-215ENST00000544547 CDCA3Q99618 268 aaPredicted RBP12.84□□□□□ -0.35
LIMS1-215ENST00000544547 ENY2Q9NPA8 101 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 PQLC2LA1A4F0 135 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 TSFMP43897 325 aaKnown RBP12.84□□□□□ -0.35
LIMS1-215ENST00000544547 SULT1A1P50225 295 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 SRYQ05066 204 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 TMEM128Q5BJH2 165 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 UEVLDQ8IX04 471 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 C17orf78Q8N4C9 275 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 RSC1A1Q92681 617 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 IER2Q9BTL4 223 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 RCC1P18754 421 aaPredicted RBP12.84□□□□□ -0.35
LIMS1-215ENST00000544547 CDKN2AP42771 156 aaKnown RBP12.84□□□□□ -0.35
LIMS1-215ENST00000544547 FAM174AQ8TBP5 190 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 MALSU1Q96EH3 234 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 FRRS1LQ9P0K9 344 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 B3GALT5Q9Y2C3 310 aa12.84□□□□□ -0.35
LIMS1-215ENST00000544547 TET1Q8NFU7 2136 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 FOLR1P15328 257 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 MPGP29372 298 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 MFGE8Q08431 387 aaPredicted RBP12.83□□□□□ -0.36
LIMS1-215ENST00000544547 ABHD17BQ5VST6 288 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 JMJD6Q6NYC1 403 aaPredicted RBP12.83□□□□□ -0.36
LIMS1-215ENST00000544547 C1orf87Q8N0U7 546 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 A0A0G2JK05 382 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 TESK1Q15569 626 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 ACER2Q5QJU3 275 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 CST9LP1Q5W188 147 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 MOB3CQ70IA8 216 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 THOC3Q96J01 351 aaKnown RBP12.83□□□□□ -0.36
LIMS1-215ENST00000544547 LAT2Q9GZY6 243 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 CBY1Q9Y3M2 126 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 PIN1P1O15428 100 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 ZNF264O43296 627 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 ADAM11O75078 769 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 OLFM2O95897 454 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 IFNA1P01562 189 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 ZNF136P52737 540 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 TAS2R46P59540 309 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 PPP2CBP62714 309 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 PPP2CAP67775 309 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 MALLQ13021 153 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 EXD3Q8N9H8 876 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 RCBTB1Q8NDN9 531 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 KCNG3Q8TAE7 436 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 AK3Q9UIJ7 227 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 CD207Q9UJ71 328 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 NXT1Q9UKK6 140 aaKnown RBP12.83□□□□□ -0.36
LIMS1-215ENST00000544547 PCDHGA1Q9Y5H4 931 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 SIP14410 1827 aa12.83□□□□□ -0.36
LIMS1-215ENST00000544547 PRSS38A1L453 326 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 BPNT1O95861 308 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 ACTL6AO96019 429 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 LCATP04180 440 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 RAB1AP62820 205 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 SP6Q3SY56 376 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 FAM78AQ5JUQ0 283 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 WDR88Q6ZMY6 472 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 OR5L1Q8NGL2 311 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 SEH1LQ96EE3 360 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 OR5B2Q96R09 309 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 C19orf43Q9BQ61 176 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 PATZ1Q9HBE1 687 aaKnown RBP12.82□□□□□ -0.36
LIMS1-215ENST00000544547 UBQLN4Q9NRR5 601 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 GNG13Q9P2W3 67 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 MRM2Q9UI43 246 aaKnown RBP12.82□□□□□ -0.36
LIMS1-215ENST00000544547 NYNRINQ9P2P1 1898 aaKnown RBP12.82□□□□□ -0.36
LIMS1-215ENST00000544547 SULT2B1O00204 365 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 CNOT4O95628 575 aaKnown RBP12.82□□□□□ -0.36
LIMS1-215ENST00000544547 RPS18P62269 152 aaKnown RBP12.82□□□□□ -0.36
LIMS1-215ENST00000544547 SLC17A1Q14916 467 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 GGNBP1Q5YKI7 109 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 MED25Q71SY5 747 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms