RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 LHFPL6Q9Y693 200 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 A0A1B0GUH1 482 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 SRSF10O75494 262 aaKnown RBP12.62□□□□□ -0.39
VPS33A-209ENST00000544349 CTAG2O75638 210 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 ITGB2P05107 769 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 FCER2P06734 321 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 SSTR2P30874 369 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 NTF4P34130 210 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 PER3P56645 1201 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 GNG2P59768 71 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 AP3S2P59780 193 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 RSPO4Q2I0M5 234 aaPredicted RBP12.62□□□□□ -0.39
VPS33A-209ENST00000544349 THOC7Q6I9Y2 204 aaKnown RBP12.62□□□□□ -0.39
VPS33A-209ENST00000544349 LUZP2Q86TE4 346 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 CATSPERDQ86XM0 798 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 C20orf196Q8IYI0 205 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 MEIOBQ8N635 442 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 OR4D10Q8NGI6 311 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 SLAMF6Q96DU3 332 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 ZNF436Q9C0F3 470 aaPredicted RBP12.62□□□□□ -0.39
VPS33A-209ENST00000544349 METTL17Q9H7H0 456 aaPredicted RBP12.62□□□□□ -0.39
VPS33A-209ENST00000544349 ZNF275Q9NSD4 429 aaPredicted RBP12.62□□□□□ -0.39
VPS33A-209ENST00000544349 KCNMB2Q9Y691 235 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 CIB4A0PJX0 185 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 MEIS3P1A6NDR6 274 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 NAP1L6A6NFF2 107 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 DHHO43323 396 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 CEACAM4O75871 244 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 TOXO94900 526 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 TGM6O95932 706 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 ZNF24P17028 368 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 MRPS10P82664 201 aaKnown RBP12.61□□□□□ -0.39
VPS33A-209ENST00000544349 RNFT1Q5M7Z0 435 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 ZNF782Q6ZMW2 699 aaPredicted RBP12.61□□□□□ -0.39
VPS33A-209ENST00000544349 OR8H1Q8NGG4 311 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 OR10S1Q8NGN2 331 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 WDR89Q96FK6 387 aaPredicted RBP12.61□□□□□ -0.39
VPS33A-209ENST00000544349 NOX3Q9HBY0 568 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 CENPMQ9NSP4 180 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 TAS2R4Q9NYW5 299 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 GDF2Q9UK05 429 aaPredicted RBP12.61□□□□□ -0.39
VPS33A-209ENST00000544349 POLR1DQ9Y2S0 133 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 R4GMQ9 66 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 GGT3PA6NGU5 568 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 XRCC3O43542 346 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 LMX1BO60663 402 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 H2BFMP0C1H6 154 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 DNASE1P24855 282 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 LGALSLQ3ZCW2 172 aaPredicted RBP12.61□□□□□ -0.39
VPS33A-209ENST00000544349 ZBTB37Q5TC79 503 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 FOXL2NBQ6ZUU3 175 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 AAED1Q7RTV5 226 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 OR51A2Q8NGJ7 313 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 OR4C16Q8NGL9 310 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 OR2AJ1Q8NGZ0 328 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 ABHD3Q8WU67 409 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 DEFB127Q9H1M4 99 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 ELF5Q9UKW6 265 aaPredicted RBP12.61□□□□□ -0.39
VPS33A-209ENST00000544349 LIPGQ9Y5X9 500 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 CEP250Q9BV73 2442 aa12.61□□□□□ -0.39
VPS33A-209ENST00000544349 PTPRZ1P23471 2315 aaPredicted RBP12.6□□□□□ -0.39
VPS33A-209ENST00000544349 TMEM272A0A1B0GTI8 110 aa12.6□□□□□ -0.39
VPS33A-209ENST00000544349 A0A1B0GVI7 797 aa12.6□□□□□ -0.39
VPS33A-209ENST00000544349 GFRA3O60609 400 aa12.6□□□□□ -0.39
VPS33A-209ENST00000544349 ACTL6AO96019 429 aa12.6□□□□□ -0.39
VPS33A-209ENST00000544349 TPOP07202 933 aa12.6□□□□□ -0.39
VPS33A-209ENST00000544349 CFPP27918 469 aa12.6□□□□□ -0.39
VPS33A-209ENST00000544349 GUCA1AP43080 201 aaPredicted RBP12.6□□□□□ -0.39
VPS33A-209ENST00000544349 LSM6P62312 80 aaKnown RBP12.6□□□□□ -0.39
VPS33A-209ENST00000544349 PCGF3Q3KNV8 242 aa12.6□□□□□ -0.39
VPS33A-209ENST00000544349 C1QTNF12Q5T7M4 302 aa12.6□□□□□ -0.39
VPS33A-209ENST00000544349 FAM166AQ6J272 317 aa12.6□□□□□ -0.39
VPS33A-209ENST00000544349 ANKRD16Q6P6B7 361 aa12.6□□□□□ -0.39
VPS33A-209ENST00000544349 GLDNQ6ZMI3 551 aaPredicted RBP12.6□□□□□ -0.39
VPS33A-209ENST00000544349 CFAP77Q6ZQR2 320 aa12.6□□□□□ -0.39
VPS33A-209ENST00000544349 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.6□□□□□ -0.39
VPS33A-209ENST00000544349 OR52B4Q8NGK2 314 aa12.6□□□□□ -0.39
VPS33A-209ENST00000544349 OR2T35Q8NGX2 323 aa12.6□□□□□ -0.39
VPS33A-209ENST00000544349 FAM3DQ96BQ1 224 aa12.6□□□□□ -0.39
VPS33A-209ENST00000544349 CITED4Q96RK1 184 aa12.6□□□□□ -0.39
VPS33A-209ENST00000544349 RBM24Q9BX46 236 aaKnown RBP12.6□□□□□ -0.39
VPS33A-209ENST00000544349 ULBP2Q9BZM5 246 aa12.6□□□□□ -0.39
VPS33A-209ENST00000544349 CHIAQ9BZP6 476 aa12.6□□□□□ -0.39
VPS33A-209ENST00000544349 NELFAQ9H3P2 528 aa12.6□□□□□ -0.39
VPS33A-209ENST00000544349 ZDHHC11Q9H8X9 412 aa12.6□□□□□ -0.39
VPS33A-209ENST00000544349 NPDC1Q9NQX5 325 aaPredicted RBP12.6□□□□□ -0.39
VPS33A-209ENST00000544349 DHDHQ9UQ10 334 aa12.6□□□□□ -0.39
VPS33A-209ENST00000544349 SLC17A2O00624 439 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 KLK10O43240 276 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 PRAF2O60831 178 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 NDUFB6O95139 128 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 MPC2O95563 127 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 VSIG10L2P0DP72 767 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 MSR1P21757 451 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 FOXC1Q12948 553 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 RAB11BQ15907 218 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 SGCAQ16586 387 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 ASB5Q8WWX0 329 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 SLC25A28Q96A46 364 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 LDAHQ9H6V9 325 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms