RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 SGCAQ16586 387 aa15.92■□□□□ 0.14
VIM-209ENST00000544301 ATPAF1Q5TC12 328 aaPredicted RBP15.92■□□□□ 0.14
VIM-209ENST00000544301 RAET1LQ5VY80 246 aa15.92■□□□□ 0.14
VIM-209ENST00000544301 B3GNTL1Q67FW5 361 aaPredicted RBP15.92■□□□□ 0.14
VIM-209ENST00000544301 AWAT2Q6E213 333 aa15.92■□□□□ 0.14
VIM-209ENST00000544301 TMED4Q7Z7H5 227 aa15.92■□□□□ 0.14
VIM-209ENST00000544301 OR13C8Q8NGS7 320 aa15.92■□□□□ 0.14
VIM-209ENST00000544301 SFXN2Q96NB2 322 aa15.92■□□□□ 0.14
VIM-209ENST00000544301 ZNF416Q9BWM5 594 aa15.92■□□□□ 0.14
VIM-209ENST00000544301 ZNF160Q9HCG1 818 aa15.92■□□□□ 0.14
VIM-209ENST00000544301 RGS11O94810 467 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 CCL1P22362 96 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 MEF2DQ14814 521 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 SCGB2B2Q4G0G5 96 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 FAM57BQ71RH2 274 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 ZNF283Q8N7M2 679 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 FAM71F1Q96KD3 344 aaPredicted RBP15.91■□□□□ 0.14
VIM-209ENST00000544301 GUCD1Q96NT3 240 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 SPACA5Q96QH8 159 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 NSG1A0A0A6YYJ2 146 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 IGHV3-15A0A0B4J1V0 119 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 OR14I1A6ND48 311 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 OR6C65A6NJZ3 312 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 HMSDA8MTL9 139 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 DISC1C4P0D8 188 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 CSN2P05814 226 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 CSNK1A1P48729 337 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 LSM6P62312 80 aaKnown RBP15.91■□□□□ 0.14
VIM-209ENST00000544301 GRB2P62993 217 aaKnown RBP15.91■□□□□ 0.14
VIM-209ENST00000544301 TRIM61Q5EBN2 209 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 PHYHD1Q5SRE7 291 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 PGAP1Q75T13 922 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 RPS19BP1Q86WX3 136 aaKnown RBP15.91■□□□□ 0.14
VIM-209ENST00000544301 GVQW1Q8N7I0 195 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 NUDCD2Q8WVJ2 157 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 PCNPQ8WW12 178 aaKnown RBP15.91■□□□□ 0.14
VIM-209ENST00000544301 TMEM54Q969K7 222 aa15.91■□□□□ 0.14
VIM-209ENST00000544301 JSRP1Q96MG2 331 aaPredicted RBP15.91■□□□□ 0.14
VIM-209ENST00000544301 MASP2O00187 686 aa15.9■□□□□ 0.14
VIM-209ENST00000544301 EIF1BO60739 113 aaKnown RBP15.9■□□□□ 0.14
VIM-209ENST00000544301 SCGNO76038 276 aa15.9■□□□□ 0.14
VIM-209ENST00000544301 NR2C1P13056 603 aa15.9■□□□□ 0.14
VIM-209ENST00000544301 GNB3P16520 340 aa15.9■□□□□ 0.14
VIM-209ENST00000544301 GSK3AP49840 483 aa15.9■□□□□ 0.14
VIM-209ENST00000544301 MLF1P58340 268 aa15.9■□□□□ 0.14
VIM-209ENST00000544301 NKPD1Q17RQ9 610 aa15.9■□□□□ 0.14
VIM-209ENST00000544301 C11orf88Q6PI97 169 aa15.9■□□□□ 0.14
VIM-209ENST00000544301 CD163Q86VB7 1156 aa15.9■□□□□ 0.14
VIM-209ENST00000544301 C12orf45Q8N5I9 185 aaPredicted RBP15.9■□□□□ 0.14
VIM-209ENST00000544301 TMEM156Q8N614 296 aa15.9■□□□□ 0.14
VIM-209ENST00000544301 OR10R2Q8NGX6 335 aa15.9■□□□□ 0.14
VIM-209ENST00000544301 ZNF385AQ96PM9 386 aaKnown RBP15.9■□□□□ 0.14
VIM-209ENST00000544301 SLC39A1Q9NY26 324 aa15.9■□□□□ 0.14
VIM-209ENST00000544301 SLC2A8Q9NY64 477 aa15.9■□□□□ 0.14
VIM-209ENST00000544301 DKKL1Q9UK85 242 aa15.9■□□□□ 0.14
VIM-209ENST00000544301 FOLR3P41439 243 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 GFOD2Q3B7J2 385 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 SLC22A6Q4U2R8 563 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 RNASE10Q5GAN6 216 aaKnown RBP15.89■□□□□ 0.13
VIM-209ENST00000544301 C10orf128Q5T292 105 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 GLIPR1L1Q6UWM5 242 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 DOK3Q7L591 496 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 RTN4RL2Q86UN3 420 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 ZNF101Q8IZC7 436 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 ANGPTL6Q8NI99 470 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 UCN2Q96RP3 112 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 NUDT16L1Q9BRJ7 211 aaKnown RBP15.89■□□□□ 0.13
VIM-209ENST00000544301 SELENOIQ9C0D9 397 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 HPF1Q9NWY4 346 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 MRPS28Q9Y2Q9 187 aaKnown RBP15.89■□□□□ 0.13
VIM-209ENST00000544301 E9PLN8 166 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 ARPC5O15511 151 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 WDPCPO95876 746 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 MSR1P21757 451 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 MPZP25189 248 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 CTSSP25774 331 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 CXADRP78310 365 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 ZNF468Q5VIY5 522 aaPredicted RBP15.89■□□□□ 0.13
VIM-209ENST00000544301 OR52W1Q6IF63 320 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 C3P1Q6ZMU1 363 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 ASB13Q8WXK3 278 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 ZC3H10Q96K80 434 aaKnown RBP15.89■□□□□ 0.13
VIM-209ENST00000544301 C1orf147Q96MC9 270 aaPredicted RBP15.89■□□□□ 0.13
VIM-209ENST00000544301 PRRT1Q99946 306 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 NICN1Q9BSH3 213 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 NAA11Q9BSU3 229 aaPredicted RBP15.89■□□□□ 0.13
VIM-209ENST00000544301 GSX2Q9BZM3 304 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 LPAR5Q9H1C0 372 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 VSIG4Q9Y279 399 aa15.89■□□□□ 0.13
VIM-209ENST00000544301 FXYD6-FXYD2A0A087WZ82 144 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 A0A0A6YYD4 124 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 C5orf63A6NC05 138 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 NPIPA2E9PIF3 369 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 NPIPA3F8WFD2 350 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 VAMP5O95183 116 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 CD63P08962 238 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 S100A11P31949 105 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 GUCA1AP43080 201 aaPredicted RBP15.88■□□□□ 0.13
VIM-209ENST00000544301 OR3A4PP47883 348 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 ZNF133P52736 654 aaPredicted RBP15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 134.8 ms