RNA–Protein interactions for RNA: ENST00000539584.5

UBE3B-209, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 2,006 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-209ENST00000539584 LDLRAD3Q86YD5 345 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 SKA3Q8IX90 412 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 KDM8Q8N371 416 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 ADAD2Q8NCV1 583 aaKnown RBP11.79□□□□□ -0.52
UBE3B-209ENST00000539584 OR56B1Q8NGI3 324 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 NUBPLQ8TB37 319 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 NKX3-1Q99801 234 aaPredicted RBP11.79□□□□□ -0.52
UBE3B-209ENST00000539584 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.79□□□□□ -0.52
UBE3B-209ENST00000539584 CYTL1Q9NRR1 136 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 MYEF2Q9P2K5 600 aaKnown RBP11.79□□□□□ -0.52
UBE3B-209ENST00000539584 POMT1Q9Y6A1 747 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 C13orf42A0A1B0GVH6 325 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 A0A1W2PNV4 684 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 PQLC2LA1A4F0 135 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 CDC14CA4D256 554 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 SSX5O60225 188 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 HOXB1P14653 301 aaPredicted RBP11.79□□□□□ -0.52
UBE3B-209ENST00000539584 GNB3P16520 340 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 ZNF20P17024 532 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 ECI1P42126 302 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 OR1D4P47884 311 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 S100A12P80511 92 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 TLE3Q04726 772 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 SURF2Q15527 256 aaPredicted RBP11.79□□□□□ -0.52
UBE3B-209ENST00000539584 OTPQ5XKR4 325 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 FAM109BQ6ICB4 259 aaPredicted RBP11.79□□□□□ -0.52
UBE3B-209ENST00000539584 RTL6Q6ICC9 239 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 LINC00346Q8IVM7 164 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 ADPRHL1Q8NDY3 354 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 PLPP5Q8NEB5 264 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 RAB3CQ96E17 227 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 ADAT3Q96EY9 351 aaPredicted RBP11.79□□□□□ -0.52
UBE3B-209ENST00000539584 URM1Q9BTM9 101 aaKnown RBP11.79□□□□□ -0.52
UBE3B-209ENST00000539584 OR11A1Q9GZK7 315 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 NRSN2Q9GZP1 204 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 LPAR5Q9H1C0 372 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 ZNF304Q9HCX3 659 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 BIN3Q9NQY0 253 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 LPAR3Q9UBY5 353 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 SRPK3Q9UPE1 567 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 RPH3AQ9Y2J0 694 aaPredicted RBP11.79□□□□□ -0.52
UBE3B-209ENST00000539584 MEMO1Q9Y316 297 aa11.79□□□□□ -0.52
UBE3B-209ENST00000539584 LOC100509620A0A075B734 347 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 FIGNL2A6NMB9 653 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 GPR31O00270 319 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 ETV2O00321 342 aaPredicted RBP11.78□□□□□ -0.52
UBE3B-209ENST00000539584 FAM157CP0CG43 387 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 LIPCP11150 499 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 HLA-DOBP13765 273 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 GLULP15104 373 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 HIST1H1DP16402 221 aaKnown RBP11.78□□□□□ -0.52
UBE3B-209ENST00000539584 FBLP22087 321 aaKnown RBP11.78□□□□□ -0.52
UBE3B-209ENST00000539584 LAP3P28838 519 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 RFC3P40938 356 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 GFERP55789 205 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 HSD11B2P80365 405 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 H3F3CQ6NXT2 135 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 Q7L0L9 218 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 ZNF101Q8IZC7 436 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 MARCH1Q8TCQ1 289 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 RHBDD1Q8TEB9 315 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 PAQR8Q8TEZ7 354 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 CMBLQ96DG6 245 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 ZFP57Q9NU63 452 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 ALKBH4Q9NXW9 302 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 CHD7Q9P2D1 2997 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 SPTBP11277 2137 aa11.78□□□□□ -0.52
UBE3B-209ENST00000539584 ZNF878C9JN71 531 aa11.77□□□□□ -0.52
UBE3B-209ENST00000539584 ACTL6AO96019 429 aa11.77□□□□□ -0.52
UBE3B-209ENST00000539584 PMP2P02689 132 aa11.77□□□□□ -0.52
UBE3B-209ENST00000539584 RAB13P51153 203 aa11.77□□□□□ -0.52
UBE3B-209ENST00000539584 TAS2R46P59540 309 aa11.77□□□□□ -0.52
UBE3B-209ENST00000539584 C9orf50Q5SZB4 431 aa11.77□□□□□ -0.52
UBE3B-209ENST00000539584 TMEM71Q6P5X7 295 aa11.77□□□□□ -0.52
UBE3B-209ENST00000539584 C11orf40Q8WZ69 217 aa11.77□□□□□ -0.52
UBE3B-209ENST00000539584 SMIM8Q96KF7 97 aa11.77□□□□□ -0.52
UBE3B-209ENST00000539584 C2orf50Q96LR7 162 aa11.77□□□□□ -0.52
UBE3B-209ENST00000539584 SAV1Q9H4B6 383 aaPredicted RBP11.77□□□□□ -0.52
UBE3B-209ENST00000539584 C5orf66Q9H5L9 145 aa11.77□□□□□ -0.52
UBE3B-209ENST00000539584 PTGES2Q9H7Z7 377 aa11.77□□□□□ -0.52
UBE3B-209ENST00000539584 FN3KRPQ9HA64 309 aa11.77□□□□□ -0.52
UBE3B-209ENST00000539584 UQCC1Q9NVA1 299 aa11.77□□□□□ -0.52
UBE3B-209ENST00000539584 CYP8B1Q9UNU6 501 aa11.77□□□□□ -0.52
UBE3B-209ENST00000539584 FLVCR1Q9Y5Y0 555 aa11.77□□□□□ -0.52
UBE3B-209ENST00000539584 LAMA3Q16787 3333 aa11.77□□□□□ -0.52
UBE3B-209ENST00000539584 KIF26BQ2KJY2 2108 aa11.77□□□□□ -0.53
UBE3B-209ENST00000539584 LAMA2P24043 3122 aaKnown RBP11.77□□□□□ -0.53
UBE3B-209ENST00000539584 VSTM2BA6NLU5 285 aa11.77□□□□□ -0.53
UBE3B-209ENST00000539584 LMX1BO60663 402 aa11.77□□□□□ -0.53
UBE3B-209ENST00000539584 ADCYAP1P18509 176 aa11.77□□□□□ -0.53
UBE3B-209ENST00000539584 PAX6P26367 422 aa11.77□□□□□ -0.53
UBE3B-209ENST00000539584 MSX1P28360 303 aa11.77□□□□□ -0.53
UBE3B-209ENST00000539584 PPM1FP49593 454 aaPredicted RBP11.77□□□□□ -0.53
UBE3B-209ENST00000539584 ARL4DP49703 201 aa11.77□□□□□ -0.53
UBE3B-209ENST00000539584 FOXK1P85037 733 aa11.77□□□□□ -0.53
UBE3B-209ENST00000539584 POU3F1Q03052 451 aaPredicted RBP11.77□□□□□ -0.53
UBE3B-209ENST00000539584 FMODQ06828 376 aa11.77□□□□□ -0.53
UBE3B-209ENST00000539584 PPA1Q15181 289 aa11.77□□□□□ -0.53
UBE3B-209ENST00000539584 OR7A5Q15622 319 aa11.77□□□□□ -0.53
UBE3B-209ENST00000539584 OGFOD3Q6PK18 319 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms