RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 GPR6P46095 362 aaPredicted RBP10.98□□□□□ -0.65
VPS28-216ENST00000533806 SLC6A9P48067 706 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 CX3CR1P49238 355 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 PRSS12P56730 875 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 ZNF121P58317 390 aaPredicted RBP10.98□□□□□ -0.65
VPS28-216ENST00000533806 TNFAIP6P98066 277 aaPredicted RBP10.98□□□□□ -0.65
VPS28-216ENST00000533806 TAF13Q15543 124 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 LCN1P1Q5VSP4 162 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 PGAP1Q75T13 922 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 OR5AS1Q8N127 324 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 ZNF283Q8N7M2 679 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 OR2Z1Q8NG97 314 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 OR13G1Q8NGZ3 307 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 TRUB1Q8WWH5 349 aaKnown RBP10.98□□□□□ -0.65
VPS28-216ENST00000533806 SGK3Q96BR1 496 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 ELMOD3Q96FG2 381 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 C9orf16Q9BUW7 83 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 EGLN1Q9GZT9 426 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 OPA3Q9H6K4 179 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 ADGRL4Q9HBW9 690 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 COPS3Q9UNS2 423 aa10.98□□□□□ -0.65
VPS28-216ENST00000533806 CD300LBA8K4G0 201 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 XRCC2O43543 280 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 MRPL3P09001 348 aaKnown RBP10.97□□□□□ -0.65
VPS28-216ENST00000533806 SBK2P0C263 348 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 HTR1FP30939 366 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 DCTDP32321 178 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 CHN2P52757 468 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 RAD23AP54725 363 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 RIPPLY3P57055 190 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 LMO4P61968 165 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 SNRPGP62308 76 aaKnown RBP10.97□□□□□ -0.65
VPS28-216ENST00000533806 GABPB1Q06547 395 aaPredicted RBP10.97□□□□□ -0.65
VPS28-216ENST00000533806 HNRNPA0Q13151 305 aaKnown RBP10.97□□□□□ -0.65
VPS28-216ENST00000533806 ZSCAN26Q16670 478 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 HFEQ30201 348 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 ZIK1Q3SY52 487 aaPredicted RBP10.97□□□□□ -0.65
VPS28-216ENST00000533806 C6orf52Q5T4I8 152 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 LRRN1Q6UXK5 716 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 MRPL21Q7Z2W9 205 aaKnown RBP10.97□□□□□ -0.65
VPS28-216ENST00000533806 GID4Q8IVV7 300 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 RFLNBQ8N5W9 214 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 BHLHE23Q8NDY6 225 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 OR52H1Q8NGJ2 320 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 CLDND2Q8NHS1 167 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 EME1Q96AY2 570 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 MSI2Q96DH6 328 aaKnown RBP10.97□□□□□ -0.65
VPS28-216ENST00000533806 OR2V2Q96R30 315 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 CNN2Q99439 309 aaKnown RBP10.97□□□□□ -0.65
VPS28-216ENST00000533806 NIPAL2Q9H841 368 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 TMEM100Q9NV29 134 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 DCAF16Q9NXF7 216 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 H2AFY2Q9P0M6 372 aaPredicted RBP10.97□□□□□ -0.65
VPS28-216ENST00000533806 WARS2Q9UGM6 360 aaKnown RBP10.97□□□□□ -0.65
VPS28-216ENST00000533806 LAMP5Q9UJQ1 280 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 LRP12Q9Y561 859 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 TMEM14AQ9Y6G1 99 aa10.97□□□□□ -0.65
VPS28-216ENST00000533806 hCG_38984A0A1B0GV85 526 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 TPD52L2O43399 206 aaKnown RBP10.96□□□□□ -0.65
VPS28-216ENST00000533806 PPIHO43447 177 aaKnown RBP10.96□□□□□ -0.65
VPS28-216ENST00000533806 ZNF254O75437 659 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 SRSF10O75494 262 aaKnown RBP10.96□□□□□ -0.65
VPS28-216ENST00000533806 PTBP3O95758 552 aaKnown RBP10.96□□□□□ -0.65
VPS28-216ENST00000533806 GABRB1P18505 474 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 TNFSF4P23510 183 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 HSD11B1P28845 292 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 RBMXP38159 391 aaKnown RBP10.96□□□□□ -0.65
VPS28-216ENST00000533806 GZMKP49863 264 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 CDC42P60953 191 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 FAM3AP98173 230 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 MAB21L1Q13394 359 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 TMED1Q13445 227 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 OCLNQ16625 522 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 ZNF684Q5T5D7 378 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 CYB5R2Q6BCY4 276 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 KCTD18Q6PI47 426 aaPredicted RBP10.96□□□□□ -0.65
VPS28-216ENST00000533806 ZBTB49Q6ZSB9 765 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 FAM57BQ71RH2 274 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 ZNF679Q8IYX0 411 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 CELF2-AS1Q8N7Q2 184 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 OR10AD1Q8NGE0 317 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 ITLN1Q8WWA0 313 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 ASB17Q8WXJ9 295 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 CCL17Q92583 94 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 MEGF10Q96KG7 1140 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 OR8B4Q96RC9 309 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 SIGLEC11Q96RL6 698 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 MNTQ99583 582 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 SP140LQ9H930 580 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 GCM1Q9NP62 436 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 CLN6Q9NWW5 311 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 FAM206AQ9NX38 181 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 MRPL15Q9P015 296 aaKnown RBP10.96□□□□□ -0.65
VPS28-216ENST00000533806 WIPI2Q9Y4P8 454 aa10.96□□□□□ -0.65
VPS28-216ENST00000533806 MXRA5Q9NR99 2828 aa10.96□□□□□ -0.66
VPS28-216ENST00000533806 YLPM1P49750 1951 aaKnown RBP10.96□□□□□ -0.66
VPS28-216ENST00000533806 ACOD1A6NK06 481 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 CLDN25C9JDP6 229 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 INAFM1C9JVW0 142 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 ANKRD65E5RJM6 399 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms