RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 TUBG1P23258 451 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 TTKP33981 857 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 OPRL1P41146 370 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 RPS27P42677 84 aaKnown RBP6.42□□□□□ -1.38
CD44-228ENST00000528455 RPL5P46777 297 aaKnown RBP6.42□□□□□ -1.38
CD44-228ENST00000528455 TGM4P49221 684 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 CCR9P51686 369 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 RIDAP52758 137 aaKnown RBP6.42□□□□□ -1.38
CD44-228ENST00000528455 TPTEP56180 551 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 OR12D2P58182 307 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 TAS2R43P59537 309 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 GRB2P62993 217 aaKnown RBP6.42□□□□□ -1.38
CD44-228ENST00000528455 SORDQ00796 357 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 TPBGQ13641 420 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 RAB35Q15286 201 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 TAF13Q15543 124 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 KRTAP27-1Q3LI81 207 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 HIKESHIQ53FT3 197 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 PABPC1L2AQ5JQF8 200 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 LIPNQ5VXI9 398 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 XAF1Q6GPH4 301 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 RPL22L1Q6P5R6 122 aaKnown RBP6.42□□□□□ -1.38
CD44-228ENST00000528455 TMEM154Q6P9G4 183 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 CFAP77Q6ZQR2 320 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 SSX6Q7RTT6 188 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.42□□□□□ -1.38
CD44-228ENST00000528455 LINC00346Q8IVM7 164 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 C1orf174Q8IYL3 243 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 CPEB3Q8NE35 698 aaKnown RBP6.42□□□□□ -1.38
CD44-228ENST00000528455 OR10S1Q8NGN2 331 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 OR1J2Q8NGS2 313 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 OR1F12Q8NHA8 337 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 SPRYD4Q8WW59 207 aaPredicted RBP6.42□□□□□ -1.38
CD44-228ENST00000528455 RORBQ92753 470 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 SPTSSAQ969W0 71 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 DCLRE1CQ96SD1 692 aaKnown RBP6.42□□□□□ -1.38
CD44-228ENST00000528455 AMELYQ99218 206 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 TBX5Q99593 518 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 MGLLQ99685 303 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 ATF6BQ99941 703 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 WNT5BQ9H1J7 359 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 CNTD2Q9H8S5 307 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 ISG20L2Q9H9L3 353 aaKnown RBP6.42□□□□□ -1.38
CD44-228ENST00000528455 NGBQ9NPG2 151 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 TUBG2Q9NRH3 451 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 MRM2Q9UI43 246 aaKnown RBP6.42□□□□□ -1.38
CD44-228ENST00000528455 PLA2G2DQ9UNK4 145 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 POLR1DQ9Y2S0 133 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 KLHDC2Q9Y2U9 406 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 LSM2Q9Y333 95 aaKnown RBP6.42□□□□□ -1.38
CD44-228ENST00000528455 SLC25A15Q9Y619 301 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 TACC2O95359 2948 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 DCHS2Q6V1P9 2916 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 TMEM269A0A1B0GVZ9 245 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 SRSF10O75494 262 aaKnown RBP6.41□□□□□ -1.38
CD44-228ENST00000528455 ABHD16AO95870 558 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 IGLV1-44P01699 117 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 PSKH1P11801 424 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 CPEP16870 476 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 ZNF14P17017 642 aaPredicted RBP6.41□□□□□ -1.38
CD44-228ENST00000528455 STOMP27105 288 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 HSD11B1P28845 292 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 MAP2K4P45985 399 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 ALDH3B2P48448 385 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 MLLT11Q13015 90 aaPredicted RBP6.41□□□□□ -1.38
CD44-228ENST00000528455 PPA1Q15181 289 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 MED22Q15528 200 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 C21orf62-AS1Q17RA5 79 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 OR2G6Q5TZ20 316 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 OTPQ5XKR4 325 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 ZNF774Q6NX45 483 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 ZNF544Q6NX49 715 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 ARL9Q6T311 187 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 DRAM2Q6UX65 266 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 UNQ6126/PRO20091Q6UXV3 157 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 COLCA1Q6ZS62 124 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 FAM220AQ7Z4H9 259 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 YIPF7Q8N8F6 280 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 HTRA1Q92743 480 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 S100PBPQ96BU1 408 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 PELI1Q96FA3 418 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 POM121L2Q96KW2 1035 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 C4orf36Q96KX1 117 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 OR5M11Q96RB7 305 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 ACTR6Q9GZN1 396 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 GCM1Q9NP62 436 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 TRIM36Q9NQ86 728 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 GNG8Q9UK08 70 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 IKZF2Q9UKS7 526 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 LRP12Q9Y561 859 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 CREBBPQ92793 2442 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 APCP25054 2843 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 ADGRG4Q8IZF6 3080 aa6.41□□□□□ -1.38
CD44-228ENST00000528455 LOC100509620A0A075B734 347 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 PRR32B1ATL7 298 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 F5H5K5 113 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 PSMD9O00233 223 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 MAGEB4O15481 346 aaPredicted RBP6.4□□□□□ -1.38
CD44-228ENST00000528455 INMTO95050 263 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 PNPP00491 289 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms