RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	KRT16	P08779	473 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	TACSTD2	P09758	323 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	CCDC172	P0C7W6	258 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	UBTFL6	P0CB48	400 aa	Predicted RBP	2.81	□□□□□ -1.96
CD44-223	ENST00000526553	DUX4L2	P0CJ85	424 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	DUX4L3	P0CJ86	424 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	DUX4L5	P0CJ88	424 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	DUX4L6	P0CJ89	424 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	DUX4L7	P0CJ90	424 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	OR5H8	P0DN80	308 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	GFAP	P14136	432 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	ZNF30	P17039	623 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	RCC1	P18754	421 aa	Predicted RBP	2.81	□□□□□ -1.96
CD44-223	ENST00000526553	RFC3	P40938	356 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	NMU	P48645	174 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	PSMD4	P55036	377 aa	Known RBP	2.81	□□□□□ -1.96
CD44-223	ENST00000526553	KRTAP10-1	P60331	282 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	YWHAE	P62258	255 aa	Known RBP	2.81	□□□□□ -1.96
CD44-223	ENST00000526553	SEMG2	Q02383	582 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	RPEL1	Q2QD12	228 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	CHRFAM7A	Q494W8	412 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	LCE1C	Q5T751	118 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	LCE1B	Q5T7P3	118 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	GPR107	Q5VW38	600 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	DUX4L9	Q6RFH8	374 aa	Predicted RBP	2.81	□□□□□ -1.96
CD44-223	ENST00000526553	LINC00173	Q6ZV60	143 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	TMEM104	Q8NE00	496 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	ITFG1	Q8TB96	612 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	CA5BP1	Q8WTZ4	195 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	KIAA1143	Q96AT1	154 aa	Predicted RBP	2.81	□□□□□ -1.96
CD44-223	ENST00000526553	EXOSC8	Q96B26	276 aa	Known RBP	2.81	□□□□□ -1.96
CD44-223	ENST00000526553	DNAJC19	Q96DA6	116 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	LRRC39	Q96DD0	335 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	GPR21	Q99679	349 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	FOXC2	Q99958	501 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	TMEM175	Q9BSA9	504 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	STMN4	Q9H169	189 aa	Predicted RBP	2.81	□□□□□ -1.96
CD44-223	ENST00000526553	FBXO44	Q9H4M3	255 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	TMEM9B	Q9NQ34	198 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	CYTL1	Q9NRR1	136 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	AGPAT4	Q9NRZ5	378 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	DUX4	Q9UBX2	424 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	DDX19B	Q9UMR2	479 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	ST3GAL6	Q9Y274	331 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	BZW2	Q9Y6E2	419 aa	Known RBP	2.81	□□□□□ -1.96
CD44-223	ENST00000526553	NFASC	O94856	1347 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	ADGRA3	Q8IWK6	1321 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	HFM1	A2PYH4	1435 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	CCDC144A	A2RUR9	1427 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	NAIP	Q13075	1403 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	NEXMIF	Q5QGS0	1516 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	NRK	Q7Z2Y5	1582 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	CLTCL1	P53675	1640 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	MYOM1	P52179	1685 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	PPL	O60437	1756 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	SBF2	Q86WG5	1849 aa		2.81	□□□□□ -1.96
CD44-223	ENST00000526553	CDC42BPG	Q6DT37	1551 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	TNS3	Q68CZ2	1445 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	CARMIL3	Q8ND23	1372 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	FAM166B	A8MTA8	275 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	ZNF99	A8MXY4	864 aa	Predicted RBP	2.8	□□□□□ -1.96
CD44-223	ENST00000526553	NDUFS8	O00217	210 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	SLC9A3R1	O14745	358 aa	Predicted RBP	2.8	□□□□□ -1.96
CD44-223	ENST00000526553	SIVA1	O15304	175 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	WISP3	O95389	354 aa	Predicted RBP	2.8	□□□□□ -1.96
CD44-223	ENST00000526553	HOXB8	P17481	243 aa	Predicted RBP	2.8	□□□□□ -1.96
CD44-223	ENST00000526553	ATF6	P18850	670 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	RAB4A	P20338	218 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	CNR1	P21554	472 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	CYB561	P49447	251 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	NCBP2	P52298	156 aa	Known RBP eCLIP	2.8	□□□□□ -1.96
CD44-223	ENST00000526553	LINC00315	P59091	139 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	UBE2M	P61081	183 aa	Known RBP	2.8	□□□□□ -1.96
CD44-223	ENST00000526553	RPS15A	P62244	130 aa	Known RBP	2.8	□□□□□ -1.96
CD44-223	ENST00000526553	SLC7A9	P82251	487 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	REG3A	Q06141	175 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	TMEM183B	Q1AE95	376 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	PIGG	Q5H8A4	983 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	TPRG1L	Q5T0D9	272 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	MLIP	Q5VWP3	458 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	RWDD4	Q6NW29	188 aa	Known RBP	2.8	□□□□□ -1.96
CD44-223	ENST00000526553	LYPD2	Q6UXB3	125 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	TMEM183A	Q8IXX5	376 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	H1FOO	Q8IZA3	346 aa	Predicted RBP	2.8	□□□□□ -1.96
CD44-223	ENST00000526553	GATS	Q8NAP1	163 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	CHST4	Q8NCG5	386 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	MDS2	Q8NDY4	140 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	OR10G4	Q8NGN3	311 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	OR6Q1	Q8NGQ2	317 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	OR8K3	Q8NH51	312 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	APH1B	Q8WW43	257 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	TOP1MT	Q969P6	601 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	LRRC58	Q96CX6	371 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	C19orf60	Q96EN9	201 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	GAL3ST2	Q9H3Q3	398 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	BEX1	Q9HBH7	125 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	SLCO1B3	Q9NPD5	702 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	DMAP1	Q9NPF5	467 aa	Predicted RBP	2.8	□□□□□ -1.96
CD44-223	ENST00000526553	ACP6	Q9NPH0	428 aa		2.8	□□□□□ -1.96
CD44-223	ENST00000526553	ISYNA1	Q9NPH2	558 aa		2.8	□□□□□ -1.96

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