RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 ACSM1Q08AH1 577 aa13.18□□□□□ -0.3
LSM1-203ENST00000520755 CDK5R1Q15078 307 aa13.18□□□□□ -0.3
LSM1-203ENST00000520755 MED22Q15528 200 aa13.18□□□□□ -0.3
LSM1-203ENST00000520755 NEDD8Q15843 81 aa13.18□□□□□ -0.3
LSM1-203ENST00000520755 FAM57BQ71RH2 274 aa13.18□□□□□ -0.3
LSM1-203ENST00000520755 ZNF611Q8N823 705 aa13.18□□□□□ -0.3
LSM1-203ENST00000520755 NUP37Q8NFH4 326 aa13.18□□□□□ -0.3
LSM1-203ENST00000520755 OR2G2Q8NGZ5 317 aa13.18□□□□□ -0.3
LSM1-203ENST00000520755 MUL1Q969V5 352 aa13.18□□□□□ -0.3
LSM1-203ENST00000520755 DHRS9Q9BPW9 319 aa13.18□□□□□ -0.3
LSM1-203ENST00000520755 BABAM2Q9NXR7 383 aa13.18□□□□□ -0.3
LSM1-203ENST00000520755 FRRS1LQ9P0K9 344 aa13.18□□□□□ -0.3
LSM1-203ENST00000520755 EIF3KQ9UBQ5 218 aaKnown RBP13.18□□□□□ -0.3
LSM1-203ENST00000520755 NUFIP1Q9UHK0 495 aaKnown RBP13.18□□□□□ -0.3
LSM1-203ENST00000520755 SLC22A13Q9Y226 551 aa13.18□□□□□ -0.3
LSM1-203ENST00000520755 ROS1P08922 2347 aa13.18□□□□□ -0.3
LSM1-203ENST00000520755 FLNBO75369 2602 aaKnown RBP13.17□□□□□ -0.3
LSM1-203ENST00000520755 OR4C45A6NMZ5 311 aa13.17□□□□□ -0.3
LSM1-203ENST00000520755 GPRIN2O60269 458 aa13.17□□□□□ -0.3
LSM1-203ENST00000520755 IGLV3-1P01715 115 aa13.17□□□□□ -0.3
LSM1-203ENST00000520755 ANXA2P07355 339 aaKnown RBP13.17□□□□□ -0.3
LSM1-203ENST00000520755 TACSTD2P09758 323 aa13.17□□□□□ -0.3
LSM1-203ENST00000520755 THBS4P35443 961 aa13.17□□□□□ -0.3
LSM1-203ENST00000520755 GBX2P52951 348 aaPredicted RBP13.17□□□□□ -0.3
LSM1-203ENST00000520755 GP2P55259 537 aaKnown RBP13.17□□□□□ -0.3
LSM1-203ENST00000520755 ERVS71-1P61550 626 aa13.17□□□□□ -0.3
LSM1-203ENST00000520755 NKX6-1P78426 367 aaPredicted RBP13.17□□□□□ -0.3
LSM1-203ENST00000520755 MSMPQ1L6U9 139 aa13.17□□□□□ -0.3
LSM1-203ENST00000520755 PAMR1Q6UXH9 720 aa13.17□□□□□ -0.3
LSM1-203ENST00000520755 C20orf204Q6ZNR8 217 aa13.17□□□□□ -0.3
LSM1-203ENST00000520755 PGLYRP3Q96LB9 341 aa13.17□□□□□ -0.3
LSM1-203ENST00000520755 MRPS26Q9BYN8 205 aaKnown RBP13.17□□□□□ -0.3
LSM1-203ENST00000520755 PBOV1Q9GZY1 135 aa13.17□□□□□ -0.3
LSM1-203ENST00000520755 MOB1AQ9H8S9 216 aa13.17□□□□□ -0.3
LSM1-203ENST00000520755 TRIM36Q9NQ86 728 aa13.17□□□□□ -0.3
LSM1-203ENST00000520755 OR52A1Q9UKL2 312 aa13.17□□□□□ -0.3
LSM1-203ENST00000520755 PLEKHA6Q9Y2H5 1048 aa13.17□□□□□ -0.3
LSM1-203ENST00000520755 APCP25054 2843 aa13.17□□□□□ -0.3
LSM1-203ENST00000520755 PNMA8CA0A1B0GUJ8 204 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 OGG1O15527 345 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 APOC1P02654 83 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 LCATP04180 440 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 JUNBP17275 347 aaPredicted RBP13.16□□□□□ -0.3
LSM1-203ENST00000520755 PCSK6P29122 969 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 APOBEC3AP31941 199 aaPredicted RBP13.16□□□□□ -0.3
LSM1-203ENST00000520755 RAD52P43351 418 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 UCP2P55851 309 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 BDH1Q02338 343 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 MLLT11Q13015 90 aaPredicted RBP13.16□□□□□ -0.3
LSM1-203ENST00000520755 MRPL28Q13084 256 aaKnown RBP13.16□□□□□ -0.3
LSM1-203ENST00000520755 ALKBH1Q13686 389 aaKnown RBP13.16□□□□□ -0.3
LSM1-203ENST00000520755 CCDC58Q4VC31 144 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 TMEM255AQ5JRV8 349 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 GLYATL3Q5SZD4 288 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 BCL2L15Q5TBC7 163 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 DMKNQ6E0U4 476 aaPredicted RBP13.16□□□□□ -0.3
LSM1-203ENST00000520755 ZNF544Q6NX49 715 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 ARL9Q6T311 187 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 ELMOD2Q8IZ81 293 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 FBXL14Q8N1E6 418 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 OR1J1Q8NGS3 322 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 OR2AE1Q8NHA4 323 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 ABHD4Q8TB40 342 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 RGP1Q92546 391 aaPredicted RBP13.16□□□□□ -0.3
LSM1-203ENST00000520755 FCGR1BQ92637 280 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 APOBEC3DQ96AK3 386 aaPredicted RBP13.16□□□□□ -0.3
LSM1-203ENST00000520755 LYZL4Q96KX0 146 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 COG8Q96MW5 612 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 MYCBPQ99417 103 aaPredicted RBP13.16□□□□□ -0.3
LSM1-203ENST00000520755 MGLLQ99685 303 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 CCL19Q99731 98 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 SOX7Q9BT81 388 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 ISYNA1Q9NPH2 558 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 FAIMQ9NVQ4 179 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 TBCCD1Q9NVR7 557 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 GTF2A1LQ9UNN4 478 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 LAMP3Q9UQV4 416 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 STARD10Q9Y365 291 aa13.16□□□□□ -0.3
LSM1-203ENST00000520755 ABCA12Q86UK0 2595 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 ZFPL1O95159 310 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 RAF1P04049 648 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 SOD3P08294 240 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 OR4A8P0C604 315 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 TTKP33981 857 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 GLRXP35754 106 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 RGS6P49758 472 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 CCR9P51686 369 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 PRSS12P56730 875 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 TAS2R43P59537 309 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 RPS23P62266 143 aaKnown RBP13.15□□□□□ -0.3
LSM1-203ENST00000520755 ADIPOQQ15848 244 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 SSX1Q16384 188 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 TIGD6Q17RP2 521 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 SYT6Q5T7P8 510 aaPredicted RBP13.15□□□□□ -0.3
LSM1-203ENST00000520755 RGS7BPQ6MZT1 257 aaPredicted RBP13.15□□□□□ -0.3
LSM1-203ENST00000520755 RPL22L1Q6P5R6 122 aaKnown RBP13.15□□□□□ -0.3
LSM1-203ENST00000520755 CDH24Q86UP0 819 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 MUC15Q8N387 334 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 OR10AC1Q8NH08 325 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 TMEM171Q8WVE6 324 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms